View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6616_high_9 (Length: 238)
Name: NF6616_high_9
Description: NF6616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6616_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 21376707 - 21376928
Alignment:
| Q |
1 |
ttgacatacatgacttgcatctaaccgtaaaagatgtgctcacttctaatgatccccacacgaatattctgccatctaatacaatttatgatcacataaa |
100 |
Q |
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| T |
21376707 |
ttgacatacatgacttgcatctaaccgtaaaagatgtgctcacttctaatgatccccacacgaatattctgctatctaatacaatttatgatcacataaa |
21376806 |
T |
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| Q |
101 |
cctcactcacatgaatttcaatgataccgaggaagatccagttctatggaacaaccaaaagaatggtattcatactccaaaaagcggttacatctggctt |
200 |
Q |
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| T |
21376807 |
cctcactcacatgaatttcaatgataccgaggaagatccagttctatggaacaaccaaaagaatggtattcatactccaaaaagcggttacatctggctt |
21376906 |
T |
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| Q |
201 |
ctcaataattccgatagagttg |
222 |
Q |
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| T |
21376907 |
ctcaataattccgacagagttg |
21376928 |
T |
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Back To:
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 25122032 - 25121974
Alignment:
| Q |
147 |
tggaacaaccaaaagaatggtattcatactccaaaaagcggttacatctggcttctcaa |
205 |
Q |
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| T |
25122032 |
tggaacaaccaaaagaatggcacttattctcaaaaaagtggttacaactggcttctcaa |
25121974 |
T |
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