View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6616_low_11 (Length: 241)

Name: NF6616_low_11
Description: NF6616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6616_low_11
NF6616_low_11
[»] chr5 (11 HSPs)
chr5 (40-230)||(21081392-21081582)
chr5 (30-212)||(27416694-27416876)
chr5 (6-212)||(20952400-20952606)
chr5 (30-212)||(18384303-18384485)
chr5 (30-212)||(26197921-26198103)
chr5 (101-212)||(33943954-33944065)
chr5 (30-198)||(19381388-19381556)
chr5 (112-212)||(30450278-30450378)
chr5 (117-212)||(24296248-24296343)
chr5 (112-212)||(24416830-24416930)
chr5 (150-198)||(26040415-26040463)
[»] scaffold0163 (1 HSPs)
scaffold0163 (4-212)||(20021-20229)
[»] chr3 (8 HSPs)
chr3 (4-212)||(2159371-2159579)
chr3 (4-212)||(40089318-40089526)
chr3 (30-212)||(6426870-6427052)
chr3 (30-212)||(8977409-8977591)
chr3 (30-185)||(16406172-16406327)
chr3 (30-212)||(9541699-9541881)
chr3 (112-198)||(28360381-28360467)
chr3 (115-155)||(25507093-25507133)
[»] chr8 (9 HSPs)
chr8 (4-190)||(23745876-23746062)
chr8 (30-212)||(21208566-21208748)
chr8 (30-198)||(14887299-14887467)
chr8 (101-196)||(22835371-22835466)
chr8 (117-212)||(18236943-18237038)
chr8 (117-212)||(18246394-18246489)
chr8 (112-212)||(20748621-20748721)
chr8 (117-212)||(33597564-33597659)
chr8 (123-212)||(12919836-12919925)
[»] chr1 (1 HSPs)
chr1 (4-212)||(20175466-20175674)
[»] scaffold0066 (1 HSPs)
scaffold0066 (4-159)||(1799-1955)
[»] scaffold0145 (1 HSPs)
scaffold0145 (30-212)||(33497-33679)
[»] chr6 (6 HSPs)
chr6 (30-212)||(24927761-24927943)
chr6 (30-212)||(16902509-16902691)
chr6 (30-212)||(31361382-31361564)
chr6 (30-185)||(18164628-18164783)
chr6 (99-212)||(27746664-27746777)
chr6 (99-155)||(11378009-11378065)
[»] chr4 (5 HSPs)
chr4 (30-198)||(16269619-16269787)
chr4 (30-212)||(6696781-6696963)
chr4 (30-198)||(17155979-17156147)
chr4 (112-212)||(26816491-26816591)
chr4 (112-212)||(54695462-54695562)
[»] chr2 (8 HSPs)
chr2 (6-212)||(27165576-27165782)
chr2 (101-198)||(45018984-45019081)
chr2 (30-212)||(9509360-9509542)
chr2 (30-212)||(18655781-18655963)
chr2 (111-198)||(22103158-22103245)
chr2 (120-155)||(29847521-29847556)
chr2 (120-179)||(29862811-29862870)
chr2 (109-178)||(22906787-22906856)
[»] scaffold0313 (2 HSPs)
scaffold0313 (29-198)||(14119-14288)
scaffold0313 (107-198)||(40-131)
[»] scaffold0611 (1 HSPs)
scaffold0611 (30-198)||(2509-2677)
[»] chr7 (11 HSPs)
chr7 (30-212)||(16137780-16137962)
chr7 (30-212)||(6539040-6539222)
chr7 (30-212)||(26353895-26354077)
chr7 (30-212)||(32102943-32103125)
chr7 (30-212)||(46501677-46501859)
chr7 (30-198)||(9540850-9541018)
chr7 (54-212)||(5387511-5387669)
chr7 (30-212)||(8505612-8505794)
chr7 (30-212)||(44901920-44902102)
chr7 (101-198)||(18663519-18663616)
chr7 (112-212)||(15179736-15179836)
[»] scaffold0254 (1 HSPs)
scaffold0254 (30-212)||(13574-13756)
[»] scaffold0141 (1 HSPs)
scaffold0141 (107-198)||(30523-30614)
[»] scaffold0049 (2 HSPs)
scaffold0049 (107-198)||(84198-84289)
scaffold0049 (99-155)||(19201-19257)
[»] scaffold0059 (1 HSPs)
scaffold0059 (108-212)||(46020-46124)
[»] scaffold0764 (1 HSPs)
scaffold0764 (107-198)||(6489-6580)
[»] scaffold0572 (1 HSPs)
scaffold0572 (107-212)||(19-124)
[»] scaffold0142 (1 HSPs)
scaffold0142 (101-198)||(32516-32613)
[»] scaffold0003 (1 HSPs)
scaffold0003 (30-178)||(153135-153283)
[»] scaffold0028 (1 HSPs)
scaffold0028 (112-212)||(99976-100076)
[»] scaffold0010 (2 HSPs)
scaffold0010 (117-212)||(261085-261180)
scaffold0010 (117-212)||(263388-263483)
[»] scaffold0233 (1 HSPs)
scaffold0233 (112-212)||(6894-6994)
[»] scaffold0021 (1 HSPs)
scaffold0021 (99-155)||(167490-167546)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 21081582 - 21081392
Alignment:
Q  40 ccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcag 139  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  21081582 ccatgactgaatagctttctcaatttgagaggaacaaagtctggaatttggtatctgaacctcaagacaaaaccatcattggaacaagatgggtgttcag 21081483  T
Q  140 aaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaaaaagtctattttgatgat 230  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  21081482 aaataaactggatgaaaatggtaaggttgtcagaaacaagccaagattagttgctcaaggttataatcaacaagaagtctattttgatgat 21081392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 27416694 - 27416876
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||| ||    
T  27416694 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaacat 27416793  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| |||||||| ||||| |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  27416794 gggttttcagaaacaaacttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 27416876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 20952400 - 20952606
Alignment:
Q  6 aatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaag 105  Q
    |||||||| |||| |||| | | |||||||||||||||||  ||||| |||||||| | ||| || || ||||| |||||||| || ||| |   ||||     
T  20952400 aatgaagccatcattgatgactcatggattgaagccatgaaggaagaactttctcagtttgaaagaaataaagtttggaatttagttccaaataatcaaa 20952499  T
Q  106 acaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataa 205  Q
     ||||||||||||||||||||||||||| ||||| || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| ||    
T  20952500 gcaaaaccatcattggaacaagatgggttttcaggaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaa 20952599  T
Q  206 tcaacaa 212  Q
    |||||||    
T  20952600 tcaacaa 20952606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 18384303 - 18384485
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18384303 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18384402  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  18384403 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 18384485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 26198103 - 26197921
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  26198103 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 26198004  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  26198003 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 26197921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 33943954 - 33944065
Alignment:
Q  101 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagat 200  Q
    |||||| |||||||||||||||||||||||||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| |    
T  33943954 tcaagataaaaccatcattggaacaagatgggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggt 33944053  T
Q  201 tataatcaacaa 212  Q
    || || ||||||    
T  33944054 tacaaccaacaa 33944065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 19381556 - 19381388
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||| | |||||||| | ||| || |||||||| ||||| || || ||| |   ||||| ||||||||||||||| |||||||    
T  19381556 tggattgaggccatgaaagaataactttctcagtttgaaagaaacaaagtttggaacttagttccaaatgatcaaggcaaaaccatcattggtacaagat 19381457  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
     ||| |||||||| || || |||||| | ||||||||||| |||||||| ||||| |||||||||||||    
T  19381456 aggttttcagaaacaagcttgatgaagaaggtaaggttgttagaaacaaagcaaggttagttgctcaag 19381388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 30450378 - 30450278
Alignment:
Q  112 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 211  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  30450378 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 30450279  T
Q  212 a 212  Q
    |    
T  30450278 a 30450278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 24296343 - 24296248
Alignment:
Q  117 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  24296343 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 24296248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 24416830 - 24416930
Alignment:
Q  112 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 211  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||  |||||||||| || ||||| || |||||||  || ||||||||    
T  24416830 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagtcatcagaaacaaagctagattggtagctcaagggtacaatcaaca 24416929  T
Q  212 a 212  Q
    |    
T  24416930 a 24416930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 26040463 - 26040415
Alignment:
Q  150 gatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    |||||||||||||| ||   ||||||||||||||||||||| |||||||    
T  26040463 gatgaaaatggtaatgtaaccagaaacaaggcaagattagtagctcaag 26040415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 20021 - 20229
Alignment:
Q  4 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 103  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||| ||||| |||||||     
T  20021 taaatgaagctatcattgatcaatcatggattgaagccatgactgaagagctttctcagtttgaaagaaacaaagtctggaatttagtacctgaacctcg 20120  T
Q  104 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattat 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| |||||| |||||||||||| ||||    
T  20121 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagtggtcagaaacaaagcaagactagttgctcaaggttat 20220  T
Q  204 aatcaacaa 212  Q
    |||||||||    
T  20221 aatcaacaa 20229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 2159371 - 2159579
Alignment:
Q  4 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 103  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| ||| || ||||||||||||||||| ||||| ||||| |     
T  2159371 taaatgaagctatcattgatcaatcatggattgaagccatgaatgaagaactttctcaatttgaaagaaacaaagtctggaatttagtacctgaaccacg 2159470  T
Q  104 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattat 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||  |||||||||||| ||||    
T  2159471 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagttgtcagaaacaaagcaaggctagttgctcaaggttat 2159570  T
Q  204 aatcaacaa 212  Q
    |||||||||    
T  2159571 aatcaacaa 2159579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 40089526 - 40089318
Alignment:
Q  4 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 103  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||| || ||||||||||||||||| ||||| ||||||||    
T  40089526 taaatgaagctatcattgatcaatcatggattgaagccatgactgaagaactttctcaatttgaaagaaacaaagtctggaatttagtacctgaacctca 40089427  T
Q  104 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattat 203  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||| |||||| |||| ||||||| ||||    
T  40089426 agacaaaactatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagtggtaagaaacaaagcaagactagtagctcaaggttat 40089327  T
Q  204 aatcaacaa 212  Q
    |||||||||    
T  40089326 aatcaacaa 40089318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 6426870 - 6427052
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6426870 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6426969  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| |||||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6426970 gggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6427052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 8977409 - 8977591
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  8977409 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 8977508  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  8977509 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 8977591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 16406172 - 16406327
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16406172 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16406271  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaaga 185  Q
    |||| |||||||| || || |||||| | ||||| |||||||||||||| ||||||    
T  16406272 gggttttcagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaga 16406327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 9541699 - 9541881
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  9541699 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 9541798  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||| | ||||||||||||| ||| || ||||||    
T  9541799 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcacggttagttgctcaaggttacaaccaacaa 9541881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 28360467 - 28360381
Alignment:
Q  112 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    ||||||||||||||||||| || || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||    
T  28360467 ccatcattggaacaagatgtgtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaag 28360381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 25507133 - 25507093
Alignment:
Q  115 tcattggaacaagatgggtgttcagaaataaactagatgaa 155  Q
    ||||||||||||||||||| || ||||| ||||||||||||    
T  25507133 tcattggaacaagatgggtttttagaaacaaactagatgaa 25507093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 23746062 - 23745876
Alignment:
Q  4 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 103  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||    
T  23746062 taaatgaagttatcactaatcaatcatggattgaagccatgacttaagagctttctcaatttgagagaaacaaagtctggaattcggtacctgaacctca 23745963  T
Q  104 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagt 190  Q
    |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  23745962 agacgaaaccatcattggaacaagatgggtgttcagagatatactagatgaaaatggtaaggttgtcagaaacaaggaaagattagt 23745876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 21208748 - 21208566
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  21208748 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 21208649  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  21208648 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 21208566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 14887467 - 14887299
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  || || |||||||| | ||| || |||||||| ||||| || || ||| |   ||||||||||| |||||||||||||||||    
T  14887467 tggattgaggccatgaaggaggaactttctcagtttgaaagaaacaaagtttggaacttagttccaaataatcaagacaaaagcatcattggaacaagat 14887368  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    ||||||| ||||| || || ||| ||   |||||||||||||||||||| ||||| |||||||||||||    
T  14887367 gggtgtttagaaacaagcttgataaaggaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 14887299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 22835371 - 22835466
Alignment:
Q  101 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctca 196  Q
    ||||| ||||||||||||||| ||||||| ||| ||||||||||| || |||||| | |||||||||||||||||||| ||||| |||||||||||    
T  22835371 tcaaggcaaaaccatcattggtacaagataggttttcagaaataagcttgatgaagaaggtaaggttgtcagaaacaatgcaaggttagttgctca 22835466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 18236943 - 18237038
Alignment:
Q  117 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  18236943 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 18237038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 18246394 - 18246489
Alignment:
Q  117 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  18246394 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 18246489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 20748621 - 20748721
Alignment:
Q  112 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 211  Q
    ||||||||||||||||||| || || |||||||||||| ||||| | || || ||| | |||||||| || ||||| || |||||||  || ||||||||    
T  20748621 ccatcattggaacaagatgagtatttagaaataaactaaatgaagaaggaaaagttataagaaacaaagctagattggtagctcaagggtacaatcaaca 20748720  T
Q  212 a 212  Q
    |    
T  20748721 a 20748721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 33597659 - 33597564
Alignment:
Q  117 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||||||| |||||||| |||||||| ||| |||||||| | || || ||| ||||||| || || |||||||| || ||||  ||||||||||||    
T  33597659 attggaaccagatgggttttcagaaacaaattagatgaagaaggaaaagttatcagaaataaagcgagattagtcgcacaagggtataatcaacaa 33597564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 12919836 - 12919925
Alignment:
Q  123 acaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    ||||| ||||| |||||||| ||| |||||||| | || || ||||||||||| || || |||||||| || ||||  ||||||||||||    
T  12919836 acaaggtgggtcttcagaaacaaattagatgaagaaggaaaagttgtcagaaataaagctagattagtagcacaaggctataatcaacaa 12919925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 20175466 - 20175674
Alignment:
Q  4 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 103  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||| ||| || ||||||||||||||||| |||||  |||| |     
T  20175466 taaatgaagctatcattgatcaatcatggattgaagccatgaatgaagaactttctcaatttgaaagaaacaaagtctggaatttagtacctaaaccacg 20175565  T
Q  104 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattat 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||  |||||||||||| ||||    
T  20175566 agacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaagatggtaaagttgtcagaaacaaagcaaggctagttgctcaaggttat 20175665  T
Q  204 aatcaacaa 212  Q
    |||||||||    
T  20175666 aatcaacaa 20175674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 1955 - 1799
Alignment:
Q  4 taaatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctca 103  Q
    ||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||  ||| |||    
T  1955 taaatgaagttatcattaatcaatcatggattgaagccatgactgaagagctttctcaatttgagagaaacaaagtatggaatttggtacctaaacatca 1856  T
Q  104 agacaaaaccatcattggaacaagatgggtgt-tcagaaataaactagatgaaaatg 159  Q
    |||| |||||||||||||||||| ||| |||| ||||||||| ||| ||||||||||    
T  1855 agacgaaaccatcattggaacaaaatgcgtgtgtcagaaatatactggatgaaaatg 1799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 33679 - 33497
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  33679 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 33580  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| |||||||| || || |||||| |  ||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  33579 gggttttcagaaacaagcttgatgaagaacgtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 33497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 24927943 - 24927761
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  24927943 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 24927844  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| |||||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  24927843 gggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 24927761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 16902509 - 16902691
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16902509 tggattgaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16902608  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  16902609 gggtttttagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 16902691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 31361382 - 31361564
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  31361382 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 31361481  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  31361482 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 31361564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 18164628 - 18164783
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18164628 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18164727  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaaga 185  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||||    
T  18164728 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaga 18164783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 27746777 - 27746664
Alignment:
Q  99 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    ||||||||| |||| || ||||||||||||||||| || ||||| |||||||||||| | || ||  || |  ||||||| || |||||||| || ||||    
T  27746777 cctcaagaccaaacaattattggaacaagatgggtttttagaaacaaactagatgaagaaggcaaaattattcgaaacaaagccagattagtggcacaag 27746678  T
Q  199 attataatcaacaa 212  Q
      ||||||||||||    
T  27746677 gatataatcaacaa 27746664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 11378009 - 11378065
Alignment:
Q  99 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 155  Q
    ||||||||  |||| |||||||||||||||||||| || ||||| |||||| |||||    
T  11378009 cctcaagatcaaacaatcattggaacaagatgggtttttagaaacaaactaaatgaa 11378065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 16269619 - 16269787
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  16269619 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 16269718  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    |||| |||||||| || || |||||| |  ||||||||||||||||||| ||||| |||||||||||||    
T  16269719 gggttttcagaaacaagcttgatgaagaacgtaaggttgtcagaaacaaagcaaggttagttgctcaag 16269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 6696781 - 6696963
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6696781 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6696880  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6696881 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6696963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 17155979 - 17156147
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| |   ||||| ||||||||||||||| |||||||    
T  17155979 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaatgatcaaggcaaaaccatcattggtacaagat 17156078  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    | || |||| ||| || || |||||| | |||||||||||||||||||| ||||| |||||||||||||    
T  17156079 gagttttcataaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 17156147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 26816491 - 26816591
Alignment:
Q  112 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 211  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  26816491 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 26816590  T
Q  212 a 212  Q
    |    
T  26816591 a 26816591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 54695562 - 54695462
Alignment:
Q  112 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 211  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  54695562 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 54695463  T
Q  212 a 212  Q
    |    
T  54695462 a 54695462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 27165782 - 27165576
Alignment:
Q  6 aatgaagctatcactgatcaataatggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaag 105  Q
    |||||||| |||| |||| | | |||||||||||||||||  ||||| |||||||| | ||| || |||||||| |||||||| || ||| |   ||||     
T  27165782 aatgaagccatcattgatgactcatggattgaagccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaatttagttccaaataatcaaa 27165683  T
Q  106 acaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataa 205  Q
     ||||||||||||||||||||||||||| ||||| || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| ||    
T  27165682 gcaaaaccatcattggaacaagatgggttttcaggaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaa 27165583  T
Q  206 tcaacaa 212  Q
    |||||||    
T  27165582 tcaacaa 27165576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 45018984 - 45019081
Alignment:
Q  101 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| | |||||||||||||||||||| ||||| |||||||||||||    
T  45018984 tcaagacaaaaccatcattggaacaagatgggttttcagaaacaaacttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaag 45019081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 9509542 - 9509360
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  9509542 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 9509443  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  9509442 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 9509360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 18655781 - 18655963
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  18655781 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 18655880  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  18655881 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 18655963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 22103158 - 22103245
Alignment:
Q  111 accatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    |||||||||||||||||||||||||| |||||||| || |||||| |||  || ||||  ||||||||||||||||| ||||||||||    
T  22103158 accatcattggaacaagatgggtgtttagaaataagcttgatgaagatgacaaagttgctagaaacaaggcaagattggttgctcaag 22103245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 155
Target Start/End: Complemental strand, 29847556 - 29847521
Alignment:
Q  120 ggaacaagatgggtgttcagaaataaactagatgaa 155  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29847556 ggaacaagatgggtgttcaaaaataaactagatgaa 29847521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 29862870 - 29862811
Alignment:
Q  120 ggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaag 179  Q
    |||| |||||||||||||||||| |||||||||||| |  |||||||  |||||||||||    
T  29862870 ggaataagatgggtgttcagaaacaaactagatgaagaaagtaaggtgatcagaaacaag 29862811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 22906787 - 22906856
Alignment:
Q  109 aaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 178  Q
    ||||||||||| ||||||||||| | || ||||| || || |||||| | ||||||||| ||||||||||    
T  22906787 aaaccatcattagaacaagatggatttttagaaacaagcttgatgaagaaggtaaggttttcagaaacaa 22906856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 14119 - 14288
Alignment:
Q  29 atggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaaga 128  Q
    |||||||||||||||||  ||||| |||||||||| ||| || |||||||| |||||||| || ||| |   ||||  ||||||||||||||||||||||    
T  14119 atggattgaagccatgaaggaagaactttctcaatttgaaagaaacaaagtttggaatttagttccaaataatcaaagcaaaaccatcattggaacaaga 14218  T
Q  129 tgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    ||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  14219 tgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 14288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 40 - 131
Alignment:
Q  107 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  40 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 2509 - 2677
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| ||||| || || ||| ||  |||||||||||||||||||||||||||||    
T  2509 tggattgaggccatgaaagaagaactttctcagtttgaaagaaacaaagtttggaacttagttccaaaaaatcaagacaaaaccatcattggaacaagat 2608  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    |||| |||||||| || || |||||| |   |||||||||||||||||| ||||| |||||||||||||    
T  2609 gggttttcagaaacaagcttgatgaagaatttaaggttgtcagaaacaaagcaaggttagttgctcaag 2677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 16137962 - 16137780
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| | |||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  16137962 tggattgaggtcatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 16137863  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | |||||||||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  16137862 gggtttttagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 16137780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 6539040 - 6539222
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  6539040 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 6539139  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  6539140 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 6539222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 26354077 - 26353895
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  26354077 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 26353978  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  26353977 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 26353895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 32102943 - 32103125
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  32102943 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 32103042  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  32103043 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 32103125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 46501677 - 46501859
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  46501677 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 46501776  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  46501777 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 46501859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 9541018 - 9540850
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||||| |||||||| | ||| || |||||||| |||||  | || ||| |   | |||||||||||||||||||||||||||    
T  9541018 tggattgaggccatgaaggaagaactttctcagtatgaaagaaacaaagtttggaacctagttccaaataattaagacaaaaccatcattggaacaagat 9540919  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    || | |||||||| ||||| |||||| | ||||||||||||| |||||| ||||| |||||||||||||    
T  9540918 ggattttcagaaacaaacttgatgaagaaggtaaggttgtcaaaaacaaagcaaggttagttgctcaag 9540850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 212
Target Start/End: Complemental strand, 5387669 - 5387511
Alignment:
Q  54 ctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatg 153  Q
    |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| |||||||||||||||||||||||||| || ||||| || || ||||    
T  5387669 ctttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagatgggtttttagaaacaagcttgatg 5387570  T
Q  154 aaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    || | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  5387569 aagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 5387511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 8505612 - 8505794
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  8505612 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 8505711  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  8505712 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 8505794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 44901920 - 44902102
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||| ||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  44901920 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacagagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 44902019  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  44902020 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 44902102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 18663519 - 18663616
Alignment:
Q  101 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    ||||| ||||||||||||||||||||||||| | |||| ||| || || |||||| |  ||||||||||||||||||| ||||| || ||||||||||    
T  18663519 tcaaggcaaaaccatcattggaacaagatggtttttcaaaaacaagcttgatgaagaaagtaaggttgtcagaaacaaagcaaggttggttgctcaag 18663616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 15179736 - 15179836
Alignment:
Q  112 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 211  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  15179736 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 15179835  T
Q  212 a 212  Q
    |    
T  15179836 a 15179836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 13756 - 13574
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||| | |||||||  ||||| |||||||| | ||| || |||||||| ||||| ||||| ||| |   |||||| ||||||||||||||||||||||    
T  13756 tggattaaggccatgaaggaagaactttctcagtttgaaagaaacaaagtttggaacttggttccaaataatcaagataaaaccatcattggaacaagat 13657  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    |||| || ||||| || || |||||| | ||||| |||||||||||||| ||||| ||||||||||||| ||| || ||||||    
T  13656 gggtttttagaaacaagcttgatgaagaaggtaaagttgtcagaaacaaagcaaggttagttgctcaaggttacaaccaacaa 13574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 30523 - 30614
Alignment:
Q  107 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| ||||| |||||||||||||    
T  30523 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggaaaggttgtcagaaacaaagcaaggttagttgctcaag 30614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 84289 - 84198
Alignment:
Q  107 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | || ||||||||||||||||| ||||| |||||||||||||    
T  84289 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggaaaggttgtcagaaacaaagcaaggttagttgctcaag 84198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 19201 - 19257
Alignment:
Q  99 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 155  Q
    ||||||||  |||| || ||||||||||||||||| || ||||| ||||||||||||    
T  19201 cctcaagatcaaacaattattggaacaagatgggtctttagaaacaaactagatgaa 19257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 46124 - 46020
Alignment:
Q  108 aaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatc 207  Q
    |||||||||||||||||||||||||| |||||||| || || |||||| |||| || ||||||||||| || ||||| ||||||||||||| ||| || |    
T  46124 aaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagatggcaaagttgtcagaaataaagcaaggttagttgctcaaggttacaacc 46025  T
Q  208 aacaa 212  Q
    |||||    
T  46024 aacaa 46020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 6580 - 6489
Alignment:
Q  107 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    ||||||||||||||||||||||||||| |||||||| || || |||||| | |||||||||||||||||||| |||||  |||| |||||||    
T  6580 caaaaccatcattggaacaagatgggttttcagaaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaag 6489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 19 - 124
Alignment:
Q  107 caaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataat 206  Q
    ||||||||||||||||||||||||||| ||||  || || || |||||| | |||||||||||||||||||| |||||  |||| ||||||| ||| |||    
T  19 caaaaccatcattggaacaagatgggttttcaagaacaagcttgatgaagaaggtaaggttgtcagaaacaaagcaaggctagtagctcaaggttacaat 118  T
Q  207 caacaa 212  Q
    ||||||    
T  119 caacaa 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 32613 - 32516
Alignment:
Q  101 tcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaag 198  Q
    ||||| |||||||||||||||||||||||| || |||||||| ||||  |||||| | ||||||||||||||||  || ||||| |||||||||||||    
T  32613 tcaaggcaaaaccatcattggaacaagatgagttttcagaaacaaacatgatgaagaaggtaaggttgtcagaagaaaagcaaggttagttgctcaag 32516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 153135 - 153283
Alignment:
Q  30 tggattgaagccatgactgaagagctttctcaatctgagaggaacaaagtctggaatttggtaccagaacctcaagacaaaaccatcattggaacaagat 129  Q
    |||||||| |||||||  ||||| |||||||||| |||  | |||||||| |||||||| ||  || |   ||||  |||||||||||||||||||||||    
T  153135 tggattgaggccatgaaggaagaactttctcaatttgaacgaaacaaagtttggaatttagttacaaataatcaaagcaaaaccatcattggaacaagat 153234  T
Q  130 gggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaa 178  Q
    |||| || ||||| || || |||||| | ||||||||| ||||||||||    
T  153235 gggttttaagaaacaagcttgatgaagaaggtaaggttatcagaaacaa 153283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 100076 - 99976
Alignment:
Q  112 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 211  Q
    |||||||||||||||||||||| || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  100076 ccatcattggaacaagatgggtatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 99977  T
Q  212 a 212  Q
    |    
T  99976 a 99976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 261085 - 261180
Alignment:
Q  117 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| || || ||||||||||| ||||  || |||||||||    
T  261085 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaagccagattagttgcacaaggctacaatcaacaa 261180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 263388 - 263483
Alignment:
Q  117 attggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaacaa 212  Q
    ||||||||||||||||| || |||||||||||||||||| | || || ||| ||||||| ||  | ||||||||||| ||||  || |||||||||    
T  263388 attggaacaagatgggtttttagaaataaactagatgaagaaggaaaagttatcagaaataaaaccagattagttgcacaaggctacaatcaacaa 263483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 6894 - 6994
Alignment:
Q  112 ccatcattggaacaagatgggtgttcagaaataaactagatgaaaatggtaaggttgtcagaaacaaggcaagattagttgctcaagattataatcaaca 211  Q
    |||||||||||||||||||| | || |||||||||||| ||||| | || || ||| |||||||||| || ||||| || |||||||  || ||||||||    
T  6894 ccatcattggaacaagatggatatttagaaataaactaaatgaagaaggaaaagttatcagaaacaaagctagattggtagctcaagggtacaatcaaca 6993  T
Q  212 a 212  Q
    |    
T  6994 a 6994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 167490 - 167546
Alignment:
Q  99 cctcaagacaaaaccatcattggaacaagatgggtgttcagaaataaactagatgaa 155  Q
    ||||||||  |||| |||||||||||||||||||| || ||||| ||||||||||||    
T  167490 cctcaagatcaaacaatcattggaacaagatgggtttttagaaacaaactagatgaa 167546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University