View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6616_low_2 (Length: 594)
Name: NF6616_low_2
Description: NF6616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6616_low_2 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 221 - 576
Target Start/End: Original strand, 27668417 - 27668783
Alignment:
| Q |
221 |
atgcttgaatgatatgccatgcaaagacttcaacaaaggtgcaaagagcttgtttgaatgacgaatctcgaattatcggagtaacgttagttttttgaga |
320 |
Q |
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| T |
27668417 |
atgcttgaatgatatgccatgcaaaagcttcaacaaatgt--aaagagcttgtttgaatgacgaatctcaaattatcggagtaacgttagttttttgaga |
27668514 |
T |
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| Q |
321 |
ttttgtttgaaga---------tgatctgataaattgagattcgtcgttagtacaatttctctttacacccttgttgaggcctctgcatacataacattc |
411 |
Q |
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| T |
27668515 |
tttagtttgaagaaactaacgttgatctgataaattgagattcgtcattcgtacaatttctctttacacccttgttgaggcctctgcatacataacattc |
27668614 |
T |
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| Q |
412 |
aagcaccactagtacat----ggtttcttttatatatccaaaattaatttctgttatggctaactttcatcgcattcattccaaattgaagtacaatttc |
507 |
Q |
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| T |
27668615 |
aagcaccactagtacatccatggcttcttttatatatccaaaattaatttctgtcatggctaactttcatcgcattcattccaacttgaagttcaatttc |
27668714 |
T |
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| Q |
508 |
cttgatgccttaaccatgttggcttacattttcttcctcgtagccaattgttcttagtcttttgatacc |
576 |
Q |
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| T |
27668715 |
cttgatgccttaaccatgttggcttacatttttgtcctcgtagtcaattgttcttagtcttttgatacc |
27668783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 27668173 - 27668321
Alignment:
| Q |
63 |
taaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagataaatgatttgggtgtggagttgaaaggcgaggatcaaaaggccaagacca |
162 |
Q |
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| T |
27668173 |
taaatcaacggcttcagtattgaggttagtgatgttgacggagtcaagataaatgatttgggtgtggagttgaaaggcgaggatcaaaaggctaagacca |
27668272 |
T |
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| Q |
163 |
tttacgttgtctacgagaaagaaaatgtaaaccaacatggttaaagcaa |
211 |
Q |
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| T |
27668273 |
tttacgttgtctacgagaaagaaaatggaaaccaacatggttaaagcaa |
27668321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 27668918 - 27668773
Alignment:
| Q |
7 |
tggacatcatcattgttggaagtatgaaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagt |
106 |
Q |
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| T |
27668918 |
tggacctcttcattgttgtgagtatgaaatatgaaccataaatcaaatatggccgttaaatcaagggcttcggtattgaggttagtgatgttggaggagt |
27668819 |
T |
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| Q |
107 |
caagataaatgatttgggtgtggagttgaaaggcgaggatcaaaag |
152 |
Q |
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| T |
27668818 |
caaggtaaatggttggagtgtggagttgaaaggtgggtatcaaaag |
27668773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 27673687 - 27673541
Alignment:
| Q |
13 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagat |
112 |
Q |
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| T |
27673687 |
tcatcattgttgggagtatgaaaaatgaacgatgaatcaaacgtggctattaagttaagggcttcggtattgaggttagttatgttgacggagtcaagat |
27673588 |
T |
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| Q |
113 |
aaatgatttgggtgtggagttgaaaggcgaggatcaaaaggccaaga |
159 |
Q |
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| T |
27673587 |
aaatgcttggggtgttgagttgaaaggtgggtatcaaaaggctaaga |
27673541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 27668141 - 27668180
Alignment:
| Q |
13 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaa |
52 |
Q |
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| T |
27668141 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaa |
27668180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 550
Target Start/End: Complemental strand, 27668340 - 27668283
Alignment:
| Q |
493 |
ttgaagtacaatttccttgatgccttaaccatgttggcttacattttcttcctcgtag |
550 |
Q |
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| T |
27668340 |
ttgaagtgcagtttccttgttgctttaaccatgttggtttccattttctttctcgtag |
27668283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 9033 - 8954
Alignment:
| Q |
33 |
aaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagat |
112 |
Q |
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| T |
9033 |
aaaaataaacgataaatcaaacgtggccgttaaattaacggctttggtattaaggttggtgatgttaacggaatcaagat |
8954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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