View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6616_low_5 (Length: 485)
Name: NF6616_low_5
Description: NF6616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6616_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 5e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 268 - 476
Target Start/End: Complemental strand, 5732029 - 5731825
Alignment:
| Q |
268 |
atctctggttgtttgggagggggagtgagacgaagagggaaggtttgagttgaggaagaagaagggtggaaattagggac--agaggcagaagcagaatt |
365 |
Q |
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| T |
5732029 |
atctctggttgtttgggagggggagtgagacgaagagggaaggtttgagttgaggaagaag---ggtgaaaa---gggaagaagaagcagaagcagaatt |
5731936 |
T |
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| Q |
366 |
ttatctagtgcaaattaattagtttggtttgattctacgtgtttcagttggatatttttgaatttatggatttgggtttgaagatgataaatttctggat |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5731935 |
ttatctagtgcaaattaattagtttggtttgattctacgtgtttcagttggatatttttgaatttatggatttgggtttgaagatgataaatttctggat |
5731836 |
T |
|
| Q |
466 |
ttttgatgatg |
476 |
Q |
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||||||||||| |
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| T |
5731835 |
ttttgatgatg |
5731825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 107 - 258
Target Start/End: Complemental strand, 5733400 - 5733249
Alignment:
| Q |
107 |
gggagaatgagagctaaatagggataataggaattgtaacacccccaatgagnnnnnnntccaacatttagcacaataaataaaaacacattcaacatca |
206 |
Q |
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| T |
5733400 |
gggagaatgagagctaaatagggataataggaattgtaacacccccaatgagaaaaaaatccaacatttagcacaataaataaaaacacattcaacatca |
5733301 |
T |
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| Q |
207 |
atttatccgttcaacatcatgaattcattgcttcaatagattcaacaaaaaa |
258 |
Q |
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| T |
5733300 |
atttatccgttcaacatcatgaattcattgcttcaatagattcaacaaaaaa |
5733249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 5733532 - 5733437
Alignment:
| Q |
12 |
ttggactggtggtggaggaagaagtaataagtgtgtggattctagatgaagaaaatgttggactgataggtgtgtaggtactggtggaagaagttg |
107 |
Q |
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| T |
5733532 |
ttggactggtggtggaggaagaagtaataagtgtgtggattctagatgaagaaaatgttggactgataggtgtgtaggtactggtggaagaagttg |
5733437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 5751697 - 5751614
Alignment:
| Q |
24 |
tggaggaagaagtaataagtgtgtggattctagatgaagaaaatgttggactgataggtgtgtaggtactggtggaagaagttg |
107 |
Q |
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| T |
5751697 |
tggaggaaggagtaataagtgtgcggattctagttgaagaagatgttggattaataggtacctaggtgctagtggaagaagttg |
5751614 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 5e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 268 - 476
Target Start/End: Complemental strand, 18655799 - 18655595
Alignment:
| Q |
268 |
atctctggttgtttgggagggggagtgagacgaagagggaaggtttgagttgaggaagaagaagggtggaaattagggac--agaggcagaagcagaatt |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||| |||||||||||||| |
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| T |
18655799 |
atctctggttgtttgggagggggagtgagacgaagagggaaggtttgagttgaggaagaag---ggtgaaaa---gggaagaagaagcagaagcagaatt |
18655706 |
T |
|
| Q |
366 |
ttatctagtgcaaattaattagtttggtttgattctacgtgtttcagttggatatttttgaatttatggatttgggtttgaagatgataaatttctggat |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18655705 |
ttatctagtgcaaattaattagtttggtttgattctacgtgtttcagttggatatttttgaatttatggatttgggtttgaagatgataaatttctggat |
18655606 |
T |
|
| Q |
466 |
ttttgatgatg |
476 |
Q |
| |
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||||||||||| |
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| T |
18655605 |
ttttgatgatg |
18655595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 18657184 - 18657031
Alignment:
| Q |
105 |
ttgggagaatgagagctaaatagggataataggaattgtaacacccccaatgagnnnnnnntccaacatttagcacaataaataaaaacacattcaacat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18657184 |
ttgggagaatgagagctaaatagggataataggaattgtaacacccccaatgagaaaaaaatccaacatttagcacaataaataaaaacacattcaacat |
18657085 |
T |
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| Q |
205 |
caatttatccgttcaacatcatgaattcattgcttcaatagattcaacaaaaaa |
258 |
Q |
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| T |
18657084 |
caatttatccgttcaacatcatgaattcattgcttcaatagattcaacaaaaaa |
18657031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 18657313 - 18657218
Alignment:
| Q |
12 |
ttggactggtggtggaggaagaagtaataagtgtgtggattctagatgaagaaaatgttggactgataggtgtgtaggtactggtggaagaagttg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18657313 |
ttggactggtggtggaggaagaagtaataagtgtgtggattctagatgaagaaaatgttggactgataggtgtgtaggtactggtggaagaagttg |
18657218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 18681735 - 18681652
Alignment:
| Q |
24 |
tggaggaagaagtaataagtgtgtggattctagatgaagaaaatgttggactgataggtgtgtaggtactggtggaagaagttg |
107 |
Q |
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| T |
18681735 |
tggaggaaggagtaataagtgtgcggattctagttgaagaagatgttggattaataggtacctaggtgctagtggaagaagttg |
18681652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 51299634 - 51299720
Alignment:
| Q |
168 |
caacatttagcacaataaataaaaac-acattcaacatcaatttatccgttcaacatcatgaattcattgcttcaatagattcaaca |
253 |
Q |
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| T |
51299634 |
caacatttaacacaataaataaaacccagattcaacatcaattcatcccttcaacatcatgaattcatgactttaacagattcaaca |
51299720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 465
Target Start/End: Original strand, 51300004 - 51300049
Alignment:
| Q |
420 |
tttttgaatttatggatttgggtttgaagatgataaatttctggat |
465 |
Q |
| |
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||||||||||| |||||||||||||||| |||| ||||||||||| |
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| T |
51300004 |
tttttgaatttctggatttgggtttgaaagtgatgaatttctggat |
51300049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 37473600 - 37473538
Alignment:
| Q |
196 |
attcaacatcaatttatccgttcaacatcatgaattcattgcttcaatagattcaacaaaaaa |
258 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||||||| ||||| | ||||||||| |||| |
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| T |
37473600 |
attcaacatcaattcatcccttcaacatcatgaattcatggcttccacggattcaacacaaaa |
37473538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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