View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6616_low_8 (Length: 312)
Name: NF6616_low_8
Description: NF6616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6616_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 4846319 - 4846617
Alignment:
| Q |
7 |
tagacaaccttaaggcaaagaatatttatcattttagaaacttcttcatcgctataacctaatctgttaatccattattccgttttcaacaatgttaagt |
106 |
Q |
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| T |
4846319 |
tagacaaccttaaggcaaagaatatttatcattttagaaacttcttcatcgctataacctaatctgttaatccattattccgttgtcaacaatgttaagg |
4846418 |
T |
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| Q |
107 |
cacatgttacctacattagtactgaaataagttatattagtgtatgtaaggaaacagagtaaaacttatacatcagcnnnnnnnnnnnnntaataaagaa |
206 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4846419 |
cacatgttacctacattagtactgaaataagttttattagtgtatgtaaggaaacagagtaaaacttatacatcagcaaaaataaaaaaataataaagaa |
4846518 |
T |
|
| Q |
207 |
gcaattttttgttgaggatatggattatttcaaggctcacttgaaaggagggtttgattttgctcaatcggcagcaacataagagacaatagaataatc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
4846519 |
gcaattttttgttgaggatatggattatttcaaggctcacttgaaaggagggtttgattttgctcaataggcagcaacataagagacaatagaagaatc |
4846617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 305
Target Start/End: Complemental strand, 4080385 - 4080069
Alignment:
| Q |
7 |
tagacaaccttaaggcaaagaatatttatcattttagaaacttcttcatcgctataacctaatctgttaatccattattccgttttcaacaatgttaagt |
106 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4080385 |
tagacaaccttaatgcaaagaatatttatcattttagaaacttcttcatcgctataacctaatttgttaatccattattccgttttcaacaatgttaagg |
4080286 |
T |
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| Q |
107 |
cacatgttacctacattagtactgaaataagttatattagtgtatgtaaggaaacagagtaaaacttatacatcagcnnnnnnnnnnnnntaataaagaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4080285 |
cacatgttacctacattagtactgaaataagttatattagtgtatgtaaggaaacagagtaaaacttatacatcagcaaaaataaaaaaataataaagaa |
4080186 |
T |
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| Q |
207 |
gcaattttttgtt------------------gaggatatggattatttcaaggctcacttgaaaggagggtttgattttgctcaatcggcagcaacataa |
288 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4080185 |
gcaattttttgttgaggatatggattatttcgaggatatggattatttcaaggctcacttgaaaggagggtttgattttgctcaataggcagcaacataa |
4080086 |
T |
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| Q |
289 |
gagacaatagaataatc |
305 |
Q |
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|||||||||||| |||| |
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| T |
4080085 |
gagacaatagaagaatc |
4080069 |
T |
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