View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6616_low_9 (Length: 252)
Name: NF6616_low_9
Description: NF6616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6616_low_9 |
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| [»] scaffold0156 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 21376371 - 21376131
Alignment:
| Q |
1 |
ccagataaatgcctttatcatttgaacctttccagatgaaattcctggttgtttgatcaatgcgactacaaattgattgaggaagccaaaaaatttccat |
100 |
Q |
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| T |
21376371 |
ccagatgaatgcctttatcatttgaacctttccagatgaaattcctggttgtttgatcaatgcgattacaaattgattgaggaagccaaaaaaattccat |
21376272 |
T |
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| Q |
101 |
ataatatggaggaatagaggagagaacagaggagaaaagagtcattcttccaggtttgtttaacagtctattcttccaagaagcaagacaagattgcatt |
200 |
Q |
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| T |
21376271 |
ataatatggaggaatagaggagagaacagaggaggcaagagtcattcttccagatttgtttaacagtttattcttccaagaagcaagacaagattgcttt |
21376172 |
T |
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| Q |
201 |
ttctcaataataaaatagaaatcattcttttttcgatattc |
241 |
Q |
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| T |
21376171 |
ttctcaataataaaatagaaatcattcttttttcgctattc |
21376131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 12645494 - 12645650
Alignment:
| Q |
77 |
ttgaggaagccaaaaaatttccatataatatggaggaatagaggagagaacagaggagaaaagagtcattcttccaggtttgtttaacagtctattcttc |
176 |
Q |
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| T |
12645494 |
ttgaggatgccaaacaatttgcatgtaataggaagggatggaagagagaaccgaagatgcaagagttaatcttcccgccttgttcaacaatttacttttc |
12645593 |
T |
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| Q |
177 |
caagaagcaagacaagattgcattttctcaataataaaatagaaatca-ttcttttt |
232 |
Q |
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| T |
12645594 |
caagaagcaagacttgattgcattttgtcaatgataaaaaggaaatcacttcttttt |
12645650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 35062718 - 35062781
Alignment:
| Q |
164 |
cagtctattcttccaagaagcaagacaagattgcattttctcaataataaaatagaaatcattc |
227 |
Q |
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| T |
35062718 |
cagtctattcttccaagaagcaagtctatattgcattttctcaataataaaataaaaatcattc |
35062781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 9535278 - 9535188
Alignment:
| Q |
137 |
aagagtcattcttccaggtttgtttaacagtctattcttccaagaagcaagacaagattgcattttctcaataataaaatagaaatcattc |
227 |
Q |
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| T |
9535278 |
aagagtcaatctatcaggtttgtttagcaatctattcttccaaaaagcgagtctgaattgcattatctcaataataaaataaaaatcattc |
9535188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0156 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0156
Description:
Target: scaffold0156; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 17722 - 17774
Alignment:
| Q |
171 |
ttcttccaagaagcaagacaagattgcattttctcaataataaaatagaaatc |
223 |
Q |
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| T |
17722 |
ttcttccaagaagcaagtctagtttacattttctcaataataaaatagaaatc |
17774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 27781206 - 27781285
Alignment:
| Q |
137 |
aagagtcattcttccaggtttgtttaacagtctattcttccaagaagcaagacaagattgcattttctcaataataaaat |
216 |
Q |
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| T |
27781206 |
aagagccaatcttccaggtttatttaacaatttgttcttccaataagcaagacgagtatgcattttgtcaataacaaaat |
27781285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 1353424 - 1353462
Alignment:
| Q |
194 |
ttgcattttctcaataataaaatagaaatcattcttttt |
232 |
Q |
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| T |
1353424 |
ttgcattttctcaataataaaatagaaattattcctttt |
1353462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 27153857 - 27153729
Alignment:
| Q |
98 |
catataatatggaggaatagaggagagaacagaggagaaaagagtcattcttccaggtttgtttaacagtctattcttccaagaagcaagacaagattgc |
197 |
Q |
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| T |
27153857 |
catataataagagggaatggaggaaagaacagaagatgcaagagtcatacttcctggtttatttaacaacctgtgcttccaagaggcaggtctggattgc |
27153758 |
T |
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| Q |
198 |
attttctcaataataaaatagaaatcatt |
226 |
Q |
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| T |
27153757 |
aatttttcaataataaaatggaagtcatt |
27153729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 6640479 - 6640573
Alignment:
| Q |
27 |
cctttccagatgaaattcctggttgtttgatcaatgcgactacaaattgattgaggaagccaaaaaatttccatataatatggaggaatagagga |
121 |
Q |
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| T |
6640479 |
cctttccagatgaaattgcgggttgtttgatcaatactatcacaaatattttgaggaagccaattaatctgcatatagtatgtaggaatggagga |
6640573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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