View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6617_high_1 (Length: 753)
Name: NF6617_high_1
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6617_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 274 - 738
Target Start/End: Complemental strand, 36808790 - 36808328
Alignment:
| Q |
274 |
tcacaatatgattataatcatacaaacattttcatttaataaatttctcgataatacctcatgtcaacttacttaaaaaattataaggaacaactataca |
373 |
Q |
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| T |
36808790 |
tcacaatatgattataatcatacaaacattttcatttaataaatttctcgataatacctcatgtcaacttacttcaaaaattataaggaacaactataca |
36808691 |
T |
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| Q |
374 |
aatattttaaagtaaataaaatttctcaaatcaccaaaacttgtgcaagccagtatatgatttcaaaatataaataccatgtaatggacaaaggttttca |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36808690 |
aatattttaaagtaaataaaatttctcaaatcaccaaaacttgtgcaagccagtatatgatttcaaaatataaataccatgtaatggacaaaggttttca |
36808591 |
T |
|
| Q |
474 |
tgtaaatcaaaatcttttccaaagctaaattcaccatcaatnnnnnnnnttgcaattcaattttgttcactcctagcagttagatagatgcgtacactta |
573 |
Q |
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| T |
36808590 |
tgtaaatcaaaatcttttccaaagctaaattcaccatcaataaaaaaaattgcaattcaattttgttcactcctagcagttagatagatgcgtacactta |
36808491 |
T |
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| Q |
574 |
ggttgtgagacttctccttatatatttgaatttgagcctcaagcttcctatatgcctcattcttatactcaaaattaccacatttgccgtaataaggaaa |
673 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
36808490 |
ggttgtgagacttctccttatatatttgaatttgagcct--tgcttcctatatgcctcattcttatactcaaaattaccacgtttgccgtaatatggaaa |
36808393 |
T |
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| Q |
674 |
gtcggaatcgtcatgcttagagaagtacgtcacaagatcttcaacgggttctgttccattctctg |
738 |
Q |
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| T |
36808392 |
gtcggaatcgtcatgcttagagaagtacgtcacaagatcttcaacgggttctgttccattctctg |
36808328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 36809064 - 36808811
Alignment:
| Q |
19 |
ctaagagtctaagacaaacaacatacatcagttcaagagctaaaacaagctatactaggaacatcccaaagtttaagtgtacaccaatgaccaaccaaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36809064 |
ctaagagtctaagacaaacaacatacatcagttcaagagctaaaacaagcta--ctaggaacatcccaaagtttaagt--acaccaatgaccaaccaaaa |
36808969 |
T |
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| Q |
119 |
aatactcaatcatatcctgaaatattaatccaagtgttgtatactcagtaatcagaccagcatatttgaagcaaccacaatatcatacatctagccatag |
218 |
Q |
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| T |
36808968 |
aatactcaatcatatcctgaaatattaatccaagtgttgtatactcggtaatcagaccagcatatttgaagcaaccacaatatcatacatctagccatag |
36808869 |
T |
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| Q |
219 |
ccattttgattctcaatcaactttcatcccaaaataaccattcaaatgcgatctttca |
276 |
Q |
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| T |
36808868 |
ccattttgattctcaatcaactttcatcccaaaataaccattcaaatgcgatctttca |
36808811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 554 - 697
Target Start/End: Original strand, 36512295 - 36512438
Alignment:
| Q |
554 |
tagatagatgcgtacacttaggttgtgagacttctccttatatatttgaatttgagcctcaagcttcctatatgcctcattcttatactcaaaattacca |
653 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36512295 |
tagatagatgcgtacacttaggttgcgagacttctccttatagatttgaatttgagcctcaagcagcctatatgcctcattcttatactcaaaattacca |
36512394 |
T |
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| Q |
654 |
catttgccgtaataaggaaagtcggaatcgtcatgcttagagaa |
697 |
Q |
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| T |
36512395 |
cttttgacgtgataaggaaagtcggaatcgtcatacttagagaa |
36512438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 386 - 465
Target Start/End: Original strand, 36511377 - 36511456
Alignment:
| Q |
386 |
taaataaaatttctcaaatcaccaaaacttgtgcaagccagtatatgatttcaaaatataaataccatgtaatggacaaa |
465 |
Q |
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| T |
36511377 |
taaataaaatttctcaaatcaccaaaacttgtgcatgtcaacatgtgatttcaaaatataaataccatgtaatggacaaa |
36511456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 36509735 - 36509831
Alignment:
| Q |
20 |
taagagtctaagacaaacaacatacatcagttcaagagctaaaacaagctatactaggaacatcccaaagtttaagtgtacaccaatgaccaaccaaaaa |
119 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||||||| |||||||||||||||||||||| | ||||||||| |
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| T |
36509735 |
taagagtctaagacaaacaacatacattagtt-aagagctaaaacaagcta--ctag-aacatccaaaagtttaagtgtacaccaatggcaaaccaaaaa |
36509830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 284 - 343
Target Start/End: Complemental strand, 33450335 - 33450276
Alignment:
| Q |
284 |
attataatcatacaaacattttcatttaataaatttctcgataatacctcatgtcaactt |
343 |
Q |
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||||||||| || |||||||||||||| ||||||||||| |||| ||||||||||||||| |
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| T |
33450335 |
attataatcttataaacattttcatttcataaatttctcaataaaacctcatgtcaactt |
33450276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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