View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6617_high_15 (Length: 233)
Name: NF6617_high_15
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6617_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 51001087 - 51000884
Alignment:
| Q |
1 |
gttccagtctcctgtttttaatatctgtatgttgtctggtgccatttttctcccttagtttgcattttactttggtctcatgagttgcctaacttattgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
51001087 |
gttccagtctcctgtttttaatatctgtatgttgtctggtgccatttttctcccttaatttgcattttactttggtctc--------------ttattgg |
51001002 |
T |
|
| Q |
101 |
ttctattgttcaatgtaggatggtagtgttccagtcttgcattgcttctatgctcgtggtgaggacaatgcaaactttcggaggagagtttatcggatgc |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51001001 |
ttctattgttcaatgtaggatggtagtgttgcagtcttgcattgcttctatgctcgtggtgaggacaatgcaaactttcggaggagagtttatcggatgc |
51000902 |
T |
|
| Q |
201 |
ttgatgagtgagtttttg |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
51000901 |
ttgatgagtgagtttttg |
51000884 |
T |
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