View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6617_high_2 (Length: 711)

Name: NF6617_high_2
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6617_high_2
NF6617_high_2
[»] chr3 (1 HSPs)
chr3 (16-688)||(45177512-45178190)


Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 16 - 688
Target Start/End: Original strand, 45177512 - 45178190
Alignment:
Q  16 attatactgtatggttactactgtgtaaatttataatagnnnnnnnnnactatttatggattcaactgtatggnnnnnnncctactacaaaataacaa-- 113  Q
    |||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||       ||||||||||||||||||      
T  45177512 attatactgtatggttactactgtgtaaatttataatagttttttttt-ctatttatggattcaactgtatggtttttttcctactacaaaataacaatt 45177610  T
Q  114 -----caccattcatgttatgttaatgaaatggtccagctcgagtgnnnnnnnnnnnnnnnt-ttaagagtttgaaacacaatgataattcatcttcttg 207  Q
         |||||||||||||||||||||||||||||||||||||||||               | |||||||||||||||||||||||||||||||||||||    
T  45177611 aacaacaccattcatgttatgttaatgaaatggtccagctcgagtgaaaaatcaaacaaattgttaagagtttgaaacacaatgataattcatcttcttg 45177710  T
Q  208 tgagtattaagttactccatgtagtaattagttttttctgattattaattccttcttatctaaagttcacagctaggcaatttctttcaagatcgcatca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45177711 tgagtattaagttactccatgtagtaattagttttttctgattattaattccttcttatctaaagttcacaactaggcaatttctttcaagatcgcatca 45177810  T
Q  308 acaatgtcatttatgtatgcaaatttactacgtgacacgagaaagtagattctttaactttgaaaattgaagagtttattcttcgtaattacgaagctat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45177811 acaatgtcatttatgtatgcaaatttactacgtgacacgagaaagtagattttttaactttgaaaattgaagagtttattcttcgtaattacgaagctat 45177910  T
Q  408 attttcaagcttcggcttgttataggttatcttgccgcgaaaataaacacaagcttagtatatttacgaaagattatggttattaaaataaaatttataa 507  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45177911 attttcaagcttcggcatgttataggtta-cttgccgcgaaaataaacacaagcttagtatatttacgaaagattatggttattaaaataaaatttataa 45178009  T
Q  508 cacgagatagacaattgagacaatctctatacttagatttaccactgtgtacatggtaattattctttttgtattctaattttagtagttcctttcaatg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45178010 cacgagatagacaattgagacaatctctatacttagatttaccactgtgtacatggtaattattctttttgtattctaattttagtagttcctttcaatg 45178109  T
Q  608 atgggtgtgtttgtgtatataggtaatcttacaaaaggacgtaattacgtatgtccgttgtcaatttagtttttctgtagg 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45178110 atgggtgtgtttgtgtatataggtaatcttacaaaaggacgtaattacgtatgtccgttgtcaatttagtttttctgtagg 45178190  T

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