View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6617_high_3 (Length: 639)
Name: NF6617_high_3
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6617_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 233 - 596
Target Start/End: Original strand, 3851579 - 3851942
Alignment:
| Q |
233 |
cccttcatcacatggttgttaacaccaagcatgtttatctcacttttcatcatctcnnnnnnnnnnnnnnnnnnnnnnngaacaagagattcaaaatatt |
332 |
Q |
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| T |
3851579 |
cccttcataacatgattgttaacaccaagcatgtttatctcacttttcatcatctcaaaaaaagaacaaaaaaaagaaagaacaagagattcaaaatatt |
3851678 |
T |
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| Q |
333 |
agtgtttttgattgtttgatgaatatctgatattatgatttaaaaaatacaagtttggctaagtatttatatgaaaggtataagagaaaaggatgatgca |
432 |
Q |
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| T |
3851679 |
agtgtttttgattgtttgatgaatatgtgatattatgatttaaaaaatacaactttggctaagtatttatatgaaaggtataagagaaaaggatgatgca |
3851778 |
T |
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| Q |
433 |
aagtcaaggtgaatttcctagaatctattattatatggtttattgaaagaaatttaagagagaaaaagtggtgttgatggtggaaaaggaaactggttag |
532 |
Q |
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| T |
3851779 |
aagtcaaggtgaatttcctagaatctattattatatggtttattgaaagaaatttaagagagaaaaagtggtgttgatggtggaaaaggaaactggttag |
3851878 |
T |
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| Q |
533 |
aaactgcgtaggt--taagaagtttctattggttatgatttagagagaaccccttaactaattaag |
596 |
Q |
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| T |
3851879 |
aaactgcgtaggttataagaagtttctattggttatgattt--agagaaccccttaactaattaag |
3851942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 3851365 - 3851540
Alignment:
| Q |
19 |
actccattgttgaattgaannnnnnngttgattttgaacatcatcaacatgaacaaaatcattaacttccacaaacatatcagcaacatttgagtcttga |
118 |
Q |
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| T |
3851365 |
actccattgttcaattgaatttttttgttgattttgaacatcatcaacatgaacaaaatcattaacttccacaaacatatcagcaacatttgagtcttga |
3851464 |
T |
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| Q |
119 |
cctgtgagctcttgcacaagtgctctaaaatttgaagcactagtcttcactttcataggacttgaaatatatgtaa |
194 |
Q |
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| T |
3851465 |
cctgtgagctcttgcacaagtgctctaaaatttgaagcactagtcttcactttcataggacttgaaatatatgtaa |
3851540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 14917486 - 14917390
Alignment:
| Q |
98 |
tcagcaacatttgagtcttgacctgtgagctcttgcacaagtgctctaaaatttgaagcactagtcttcactttcataggacttgaaatatatgtaa |
194 |
Q |
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| T |
14917486 |
tcagcaacattggagtcttggccagttagttcttgcactagggctctgaaatttgaagcattagtcttcactttcactggacttgaaatatatgtaa |
14917390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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