View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6617_high_7 (Length: 364)
Name: NF6617_high_7
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6617_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 31805869 - 31806209
Alignment:
| Q |
10 |
attattctatccattcgttagtggctgctctttcttcttatggactcaagttaacactatgannnnnnngttgttgatgttacatcaattaagacacatg |
109 |
Q |
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| T |
31805869 |
attattctatccattcgttagtggctgctctttcttcttatggactcaagttaacactatgatttttttgttgttgatgttacatcaattaatacacatg |
31805968 |
T |
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| Q |
110 |
catccatttatagcatatatgaattgctgcattgcctttattccttccctattatgtagagtaaatgaactgctacatctatgcattgatgctcatatgt |
209 |
Q |
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| T |
31805969 |
catccatttatagcatatatgaattgctgcattgcctttattccttccctattatgtagagtaaatgaactgctacatctatgcattgatgctcatatat |
31806068 |
T |
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| Q |
210 |
attgtttagtaggtatagtatatatttcttttaaatttggtagttgtatggtgttgttattaataataatgatcacaataatggttggaatgtcctgaat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31806069 |
attgtttagtaggtatagtatatatttcttttaaatttggtggttgtatggtgttgttattaataataatgatcacaataatggttggaatgtcctgaat |
31806168 |
T |
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| Q |
310 |
gcagttaagttgtgcactatccatgaaagagatatgtaatt |
350 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||| |
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| T |
31806169 |
gcagttaagttgtgcattatccatgaaagagatgtgtaatt |
31806209 |
T |
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