View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6617_low_10 (Length: 341)
Name: NF6617_low_10
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6617_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 31659044 - 31658742
Alignment:
| Q |
15 |
ctgtgaagcaatcaaacatgttcaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaagttatttgcattca |
114 |
Q |
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| T |
31659044 |
ctgtgaagcaatcaaacatgttgaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaagttatttgcattca |
31658945 |
T |
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| Q |
115 |
gatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacattccaattaaagaagaaaactcgtttccaccat |
214 |
Q |
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| T |
31658944 |
gatataaatttggaatccattttgtcatcaaatgactcttctatattacttagttttgataacaacattccaattaaagaagaaaactcgtttccaccat |
31658845 |
T |
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| Q |
215 |
caccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctcatcagataacctcat |
314 |
Q |
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| T |
31658844 |
caccattgccatttcttgcatctacaaaagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctcatcagataacctcat |
31658745 |
T |
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| Q |
315 |
atc |
317 |
Q |
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||| |
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| T |
31658744 |
atc |
31658742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 31657175 - 31657342
Alignment:
| Q |
16 |
tgtgaagcaatcaaacatgttcaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaagttatttgcattcag |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||||| | || ||||||| |
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| T |
31657175 |
tgtgaagcaatcaaacatgttcaaagaattcaagagaaccctcctttgtaccggactacatattatgaccatcacacttgcaaaagctcttaccattcag |
31657274 |
T |
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| Q |
116 |
atataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacatt |
183 |
Q |
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| T |
31657275 |
acataaaattggaatccattttgtgctacgatgactcttctatattacttagtttcgataacaacatt |
31657342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 31650164 - 31650457
Alignment:
| Q |
16 |
tgtgaagcaatcaaacatgttcaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaagttatttgcattcag |
115 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||| | ||||| ||||| |||||||||||||||||||||||||||| | || ||||||| |
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| T |
31650164 |
tgtgaagcaatcaaacatgttcaaagaatacaaaagaacccttcgttgtaccggactacatattatggccatcacacttgcaaaagctcttaccattcag |
31650263 |
T |
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| Q |
116 |
atataaatttggaatccattgtgtcatcaaa---tgactcttctatattactcagttt---tgataacaacattccaattaaagaagaaaactcgtttcc |
209 |
Q |
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| T |
31650264 |
acttaaatttggaatcaattttctcctatgatgttgactcttcaatattacttagtttcgataataacaacatttcaaataaacaagaatatccatttcg |
31650363 |
T |
|
| Q |
210 |
accat---caccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctca |
300 |
Q |
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| T |
31650364 |
accatcaccaccattgccacttcttgcatctacaaaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctca |
31650457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 31628832 - 31628760
Alignment:
| Q |
28 |
aaacatgttcaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaa |
100 |
Q |
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|||||||| ||||||| ||||||| |||||||||| || || || ||||||||||||||| | |||||||| |
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| T |
31628832 |
aaacatgtgcaaagaattcaagaggaccctccattatacagaaccatatattatggccatcataattgcaaaa |
31628760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 31657390 - 31657434
Alignment:
| Q |
219 |
attgccatttcttgcatctacaatagaggatcctaaggaagagat |
263 |
Q |
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||||||| ||||||||||||||| |||||| || ||||||||||| |
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| T |
31657390 |
attgccacttcttgcatctacaaaagaggaacccaaggaagagat |
31657434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 31678547 - 31678631
Alignment:
| Q |
16 |
tgtgaagcaatcaaacatgttcaaagaactcaagagaaccctccattgtataggactgcatattatggccatcacacttgcaaaa |
100 |
Q |
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|||||||| || |||||||| || |||| ||||||| |||||||||| || || || ||||||||||||||| | |||||||| |
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| T |
31678547 |
tgtgaagctatgaaacatgtgcagagaattcaagaggaccctccattatacagaaccatatattatggccatcatagttgcaaaa |
31678631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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