View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6617_low_12 (Length: 288)
Name: NF6617_low_12
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6617_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 43132977 - 43132714
Alignment:
| Q |
19 |
aactcgatggcggcgattctggatcttcagatttttgcagtctttgtgggatataatcctgtaaatatggttaaaactgctattagtgaaattgtgaagg |
118 |
Q |
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| T |
43132977 |
aactcgatggcggcgattctggatcttcagatttttgcagtctttgtgggatataatcctgtaaatatggttaaaactgctattagtgaaattgtgaagg |
43132878 |
T |
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| Q |
119 |
aca----tagaaaattctcaatcctagccaaagcaggggaatttattttaaatgtttttagttagtattatagannnnnnnngcaggaatatctacaagt |
214 |
Q |
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| T |
43132877 |
acatagatagaaaattctcaatcctagccaaagcaggggaatttattttaaatgtttttagttagtattatagaatttttttgcaggaatatctacaagt |
43132778 |
T |
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| Q |
215 |
atttgactatttgtgcaaccatggtacactatctacacaaattaatggatttagtactcctttg |
278 |
Q |
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| T |
43132777 |
atttgactatttgtgcaaccatggtacactatctacacagagtaatggatttagtactcctttg |
43132714 |
T |
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