View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6617_low_18 (Length: 252)
Name: NF6617_low_18
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6617_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 32836876 - 32836637
Alignment:
| Q |
2 |
atttagtttctgataaaaaataatttttaaattgggagacaaactagctcatctgttgtaataagtggatgattaatttgtttttcgcatataaatgtta |
101 |
Q |
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| T |
32836876 |
atttagtttctgataaaaaataatttttaaattgggagacaaactagctcatctgttgtaataagtggatgattaatttgtttttcgcatataaatgtta |
32836777 |
T |
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| Q |
102 |
gagattaatttgaatattattttttgtaaaaaactaaattgaactgcgaaaaaatcttaaagttttactctttatagtttttgtctaaaagagtatgggt |
201 |
Q |
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| T |
32836776 |
gagattaatttgaatattattttttgtaaaaaactaaattgaactgcgaaaaaatgttaaagtcttactctttatagtttttgtctaaaagagtatgggt |
32836677 |
T |
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| Q |
202 |
gggttcccagcttccactattcattctactttgctttcat |
241 |
Q |
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| T |
32836676 |
gggttcccagcttccactattcattctactttgctttcat |
32836637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 36648814 - 36648751
Alignment:
| Q |
92 |
ataaatgttagagattaatttgaatattattttttgtaaaaaactaaattgaactgcgaaaaaat |
156 |
Q |
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| T |
36648814 |
ataaatttcagagattaatatga-tattattttttgttaaagagtaaattgagctgcgaaaaaat |
36648751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 45086380 - 45086348
Alignment:
| Q |
94 |
aaatgttagagattaatttgaatattatttttt |
126 |
Q |
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| T |
45086380 |
aaatattagagattaatttgaatattatttttt |
45086348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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