View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6617_low_5 (Length: 421)
Name: NF6617_low_5
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6617_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 51756318 - 51755925
Alignment:
| Q |
19 |
acattgatgatagcaatattattataacatacttatgtttctctatctaatctaattagtgattactaccatacaagaacatacaactgaagctgttatt |
118 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51756318 |
acattgatgataacaatattattataacatacttatgtttctctatctaatctaattagtgattactaccatacaagaacatacagctgaagctgttatt |
51756219 |
T |
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| Q |
119 |
tgattcctccatttgcaaaggaagcaaactcgaaatcttcatcccaaaacctaacaacgttgccattaatcaccgttaaatcttggcatgtataccaccc |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51756218 |
tgattcctccatttgcaaaggaagcaaactcgaactcttcatcccaaaacctaacaacgttgccgttaatcaccgttaaatcttggcatgtataccaccc |
51756119 |
T |
|
| Q |
219 |
accttcgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttctttctcttcccataattcctccgttannnnn |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51756118 |
accttcgttctctccagttcttgtcctcaacaagttttcccaactctcccaccaccctaatcttccttctttctcttcccataattcctccgttattttt |
51756019 |
T |
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| Q |
319 |
nnnaacgtctcaacactttccttgcattctctgtcaatgtcatcttcatc------gtcataataatacaaggtaaacttcatctttccctttg |
406 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51756018 |
tttaacgtctcaacactctccttgcattctctgtcaatgtcatcttcatcttcatggtcataataatacaaggtaaacttcatctttccctttg |
51755925 |
T |
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