View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6617_low_6 (Length: 409)
Name: NF6617_low_6
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6617_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 28 - 402
Target Start/End: Original strand, 3081445 - 3081819
Alignment:
| Q |
28 |
taactttgtctgactttaggtttttcgataacattcctaatcctttatttttcgcggctacaatttggtgggcatgtcgccaccgaaacaagatgtgctt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3081445 |
taactttgtctgactttaggtttttcgataacattcctaatcctttatttttcgcggctacaatttggtgggcatgtcgccaccgaaacaagatgtgctt |
3081544 |
T |
|
| Q |
128 |
caataatgaaatttggtcgataaatcatctatcattaaacattnnnnnnntggttgaaactttcaaagcttgcttccccccactctccaatggtgcttca |
227 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3081545 |
caataataaaatttggtcgataaatcatctatcattaaacattaagaaaatggttgaaactttcaaagcttgcttccccccactctccaatggtgcttca |
3081644 |
T |
|
| Q |
228 |
cctgatagactcataaactggaataaaagcaatcactatagcgttatccttaatgttgatgaaagttgcctaggcgcccctattagagcttgctttggtc |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3081645 |
cctgatagactcataaactggaataaaagcaatcactatagcgttatccttaatgttgatggaagttacctaggcgcccctattagagcttgctttggtc |
3081744 |
T |
|
| Q |
328 |
ttgtcttaagaaataatgttggtttttattgattaggtttttatgattatattaataattcttttgatattcttc |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3081745 |
ttgtcttaagaaataatgttggtttttattgattaggtttttatgattatattaataattcttttgatattcttc |
3081819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3081407 - 3081441
Alignment:
| Q |
1 |
agataaccaatgtgcaaatgatttaactaactttg |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3081407 |
agataaccaatgtgcaaatgatttaactaactttg |
3081441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 14293520 - 14293602
Alignment:
| Q |
273 |
atccttaatgttgatgaaagttgcctaggcgcccctattagagcttgctttggtcttgtcttaagaaataatgttggttttta |
355 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||||||||||| |||||||| ||||||||| ||| ||| | ||||||| |
|
|
| T |
14293520 |
atccttaatgttgatggtagttgccttggttcccctattagagctggctttggtggtgtcttaaggaattatgctagttttta |
14293602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 14309569 - 14309651
Alignment:
| Q |
273 |
atccttaatgttgatgaaagttgcctaggcgcccctattagagcttgctttggtcttgtcttaagaaataatgttggttttta |
355 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||||||||||| |||||||| ||||||||| ||| ||| | ||||||| |
|
|
| T |
14309569 |
atccttaatgttgatggtagttgccttggttcccctattagagctggctttggtggtgtcttaaggaattatgctagttttta |
14309651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 14311705 - 14311787
Alignment:
| Q |
273 |
atccttaatgttgatgaaagttgcctaggcgcccctattagagcttgctttggtcttgtcttaagaaataatgttggttttta |
355 |
Q |
| |
|
|||||||||||||||| || ||||| || |||||||||||||| |||||||| ||||||||| ||| ||| | ||||||| |
|
|
| T |
14311705 |
atccttaatgttgatggtagctgccttggttcccctattagagctggctttggtggtgtcttaaggaattatgctagttttta |
14311787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 355
Target Start/End: Complemental strand, 564595 - 564513
Alignment:
| Q |
273 |
atccttaatgttgatgaaagttgcctaggcgcccctattagagcttgctttggtcttgtcttaagaaataatgttggttttta |
355 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | |||||||||||| | || ||| |||||||||||||||| ||||||||| |
|
|
| T |
564595 |
atccttaatgttgatggaagttgcctaggctcgcctattagagctggattcggtggtgtcttaagaaataattatggttttta |
564513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 355
Target Start/End: Original strand, 512543 - 512666
Alignment:
| Q |
231 |
gatagactcataaactggaataaaagcaatcactatagcgttatccttaatgttgatgaaagttgcctaggcgcccctattagagcttgctttggtcttg |
330 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||| | ||| || ||||||| ||| | ||| | || |||| | |||||||||||| | || ||| || |
|
|
| T |
512543 |
gataggctcataaagtggaataatagcaatcactctt-cgtcattcttaatgctgacggaagctaccaaggctctcctattagagctggattcggtggtg |
512641 |
T |
|
| Q |
331 |
tcttaagaaataatgttggttttta |
355 |
Q |
| |
|
||||||||| ||||| ||||||||| |
|
|
| T |
512642 |
tcttaagaactaatgatggttttta |
512666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 288
Target Start/End: Original strand, 11870397 - 11870507
Alignment:
| Q |
178 |
tggttgaaactttcaaagcttgcttccccccactctccaatggtgcttcacctgatagactcataaactggaataaaagcaatcactatagcgttatcct |
277 |
Q |
| |
|
|||||||||||| ||||||||||| ||| |||| |||| ||| |||| |||||| | ||||| |||||||| | |||||||| |||| | ||||| |
|
|
| T |
11870397 |
tggttgaaacttgtaaagcttgctttaatccaatctctaatgttgcatcacaagatagaattataaagtggaataacaacaatcactctagcatcatcct |
11870496 |
T |
|
| Q |
278 |
taatgttgatg |
288 |
Q |
| |
|
||||||||||| |
|
|
| T |
11870497 |
taatgttgatg |
11870507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 43798288 - 43798164
Alignment:
| Q |
231 |
gatagactcataaactggaataaaagcaatcactatagcgttatccttaatgttgatgaaagttgcctaggcgcccctattagagcttgctttggtcttg |
330 |
Q |
| |
|
|||| ||||||||| | |||| | | |||||||| |||||| ||| |||||||||||| ||| |||||| | ||||||||||| | ||| ||| | |
|
|
| T |
43798288 |
gatacactcataaagtagaatcacaacaatcactctagcgtcatctttaatgttgatggaagccgcctagacttccctattagagttgagtttagtcggg |
43798189 |
T |
|
| Q |
331 |
tcttaagaaataatgttggttttta |
355 |
Q |
| |
|
|||||| |||||||||||| ||||| |
|
|
| T |
43798188 |
tcttaaaaaataatgttggctttta |
43798164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 8655021 - 8655093
Alignment:
| Q |
231 |
gatagactcataaactggaataaaagcaat-cactatagcgttatccttaatgttgatgaaagttgcctaggc |
302 |
Q |
| |
|
|||| ||||||||| |||||||| | |||| |||||| |||| |||||||||||||||| ||| || |||||| |
|
|
| T |
8655021 |
gataaactcataaaatggaataacaacaattcactattgcgtcatccttaatgttgatggaagatgtctaggc |
8655093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University