View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6617_low_7 (Length: 376)
Name: NF6617_low_7
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6617_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 376
Target Start/End: Original strand, 43132351 - 43132718
Alignment:
| Q |
9 |
aatatattggatttgcaggtaattttttgcttagtaacatgatcatcaattcaagttagtatctatcgcgtttatagtaacatcgatattatactgtttt |
108 |
Q |
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| T |
43132351 |
aatatattggatttgcaggtaattttttgcttagtaacatgatcatcaattcaagttagtatctatcgcgtttatagtaacatccatattatactgtttt |
43132450 |
T |
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| Q |
109 |
aggaatgtgtttgcttatgcttgacggagaatatgtactcggttctaaatcatcttgtccaatatagtctagcgttcaaatcctgagaaattaacgtacc |
208 |
Q |
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| T |
43132451 |
aggaatgtgtttgcttatgcttgacggagaatatgtactcggttctaaatcatcttgtccaatatagtctagcgttcaaatcctgagaaattaacgtatc |
43132550 |
T |
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| Q |
209 |
cactaacttagtaatatttacctatccatcnnnnnnnnnnnnnnnnttcagtttaatatatacactaaaattccgtgattaacacttgtttctcgcgctc |
308 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
43132551 |
cactaacttagtaatatttacctatccatcaaaaataaataaaaaattcagtttaatatatacactaaaattacctgattaacacttgtttctcgcgctc |
43132650 |
T |
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| Q |
309 |
cgatgtgttatagttgtgactttctaaagctataaatcctagcttttgatttcactgtgaaaacaaag |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43132651 |
cgatgtgttatagttgtgactttctaaagctataaatcctagcttttgatttcactgtgaaaacaaag |
43132718 |
T |
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