View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6617_low_9 (Length: 346)
Name: NF6617_low_9
Description: NF6617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6617_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 3239408 - 3239723
Alignment:
| Q |
14 |
atgaatgaagatgcttgtaactgtctccaaattttatgggaagaacttgagacagttggttttgatttatcctggttgaa-gccttcttatttatctgcg |
112 |
Q |
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| T |
3239408 |
atgaatgaagatgcttgtaactgtctccaaatttaatgggaagaacttgagacagttggttttgatttatcctggttgaaagccttcttatttatctgcg |
3239507 |
T |
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| Q |
113 |
atgaggacgaaaaattatgtccagagagaagcaaatgtgaaaaagctgaggaagaatgtagaacttatagagagggatcttgcaacagcaagaaaagagt |
212 |
Q |
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| T |
3239508 |
atgaggacgaaaaattatgtccagagagaagcaaatgtgaaaaagctgaggaagaatgtagaacttatagagagggatcttgcaacagcaagaaaagagt |
3239607 |
T |
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| Q |
213 |
tgattgaagcagaaaaaggatttgtggagagggatttggatgctaaactaggatatggagcaccctagacttttgttatttttctattgcatgaacatgc |
312 |
Q |
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| T |
3239608 |
tgattgaagcagaaaaaggattcgtggagagggatttggatgctaaactaggatatggagcaccctagacttttgttatttttctattgcatgaacatgc |
3239707 |
T |
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| Q |
313 |
actattttgttatctt |
328 |
Q |
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| T |
3239708 |
actattttgttatctt |
3239723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 3244018 - 3244298
Alignment:
| Q |
14 |
atgaatgaagatgcttgtaactgtctccaaattttatgggaagaacttgagacagttggttttgatttatcctggttgaagccttcttatttatctgcga |
113 |
Q |
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| T |
3244018 |
atgaatgaagaagcttgtaatcatctccaaattttatgggaagaacttgagacagtaggttttgatttatcctggttgaagccatattttgaatctgcaa |
3244117 |
T |
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| Q |
114 |
tgaggacgaaaaattatgtccagagagaagcaaatgtgaaaaagctgaggaagaatgtagaacttatagagagggatcttgcaacagcaagaaaagagtt |
213 |
Q |
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| T |
3244118 |
ttgataagaaaagttatgctcagagatatgcaagtgtgaataggctgaggaagactatagaggctctagagagtgatcatgctaaagcaagagaagagtt |
3244217 |
T |
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| Q |
214 |
gattgaagcagaaaaaggatttgtggagagggatttggatgctaaactaggatatggagcaccctagacttttgttatttt |
294 |
Q |
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| T |
3244218 |
gattgaagcagaaaaagaatttgtagagagggatttggatgctaaactaggctatggagcagcttagacttatgttatttt |
3244298 |
T |
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