View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6618_high_1 (Length: 715)
Name: NF6618_high_1
Description: NF6618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6618_high_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 178 - 715
Target Start/End: Complemental strand, 50202638 - 50202118
Alignment:
| Q |
178 |
ttcaccttatactagttgaatacctacgatttacgttgctcttaaccaaagcaacattgaaatttgaagcttcatattcttattctcaaagtctaataaa |
277 |
Q |
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| T |
50202638 |
ttcaacttatactagttgaatacctacgatttacgttgctcttacccaaagcaacattgaaatttgaagcttcatattcttattctcaaagtctaataaa |
50202539 |
T |
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| Q |
278 |
agcagcctccagaggagaaagaacaaagtggattattttcaatgacagtgataaatgaacaccccacttccactttttgtactctccgtgacatctagtt |
377 |
Q |
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| T |
50202538 |
agcagcctccagaggagaaagaacaaagtggattattttcaatgacagtgataaatgaacaccccacttccactttttgtactctcggtgacatctagtt |
50202439 |
T |
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| Q |
378 |
aaccacgatcaaagatggataatttaatttacgatcaaatttacggttagttcaatagcgtgagttagccacaatacatgaattaaattaatcatgtttt |
477 |
Q |
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| T |
50202438 |
aaccacgatcaaagatggataatttaatttacg------------gttagttcaatagcgtgaattagccacaatacatgaactaaattaatcatgtttt |
50202351 |
T |
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| Q |
478 |
caactgaattttttatacacagtatcgtgggtgtgtgaaaaatgattttactacctgataatgcactgtgttaccaaattacaatcaaacacaaaattca |
577 |
Q |
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| T |
50202350 |
caactgaattttt-atacagagtatcgtgggtgtgtgaaaaatgattttactacctgataatgcattgtgttaccaaattacaatcaaacacaaaattca |
50202252 |
T |
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| Q |
578 |
ataaaattcttacagctctgctgtttgtgaatatccatccatccatgttgagaaagcaataacaaaaaacaagttcaatgatgaatgaatacaaagactg |
677 |
Q |
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| T |
50202251 |
ataaaattcttacatctctgctatttgtgaatatccat----ccatgttgagaaagcaataacaaaaaacaagttcaatgatgaatgaatacaaagactg |
50202156 |
T |
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| Q |
678 |
tgtgctgtacattgtcaaatcaatctaaacgaatctta |
715 |
Q |
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| T |
50202155 |
tgtgctgtacattgtcaaatcaatctaaccgaatctta |
50202118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 50202933 - 50202761
Alignment:
| Q |
12 |
cagaacctgtgattggtttatttctggataaggnnnnnnngcaagggaaagtgaaattatgacatggatgttcatggatcaaccgacactgtactc---- |
107 |
Q |
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| T |
50202933 |
cagaacccgtgattggtttatttctggataaggaaaaaaagcaagggaaagtgaaattatgacatggatgttcatggatcaaccgacactgtactctcct |
50202834 |
T |
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| Q |
108 |
---------------tactaatactactctcttcttttcaataaaacgaagttacctatttaagcttcaactt |
165 |
Q |
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| T |
50202833 |
aatggctcaaacaaatactaatactactctcttcttttcaataaaacgaagttacctatttaagcttcaactt |
50202761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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