View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6618_high_3 (Length: 451)
Name: NF6618_high_3
Description: NF6618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6618_high_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 28530785 - 28530351
Alignment:
| Q |
17 |
aagtagatgtatctgattcaaatttttaaccatacattaattttgcttgacttatatttgcttatatttaagaccggagtagtaattatgtgaattaaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530785 |
aagtagatgtatctgattcaaatttttaaccatacattaattttgcttgacttatatttgcttatatttaagaccggagtagtaattatgtgaattaaga |
28530686 |
T |
|
| Q |
117 |
aacgtagtatttgattaattcccttctttattttgtaaatgctaattccttaccaggattgaaattgtcggttgcagcaacaagatcttcataactaaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530685 |
aacgtagtatttgattaattcccttctttattttgtaaatgctaattccttaccaggattgaaattgtcggttgcagcaacaagatcttcataactaaag |
28530586 |
T |
|
| Q |
217 |
tttctccaagaaggctttgtaataccatcaagatcaaaagcagcatcaaaaatattctcatcttcatcgttagctgttcttttacgagccaacttgttcc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530585 |
tttctccaagaaggctttgtaataccatcaagatcaaaagcagcatcaaaaatattctcatcttcatcgttagctgttcttttacgagccaacttgttcc |
28530486 |
T |
|
| Q |
317 |
tcaaattcttcctagaaatttcataactagcagcaagcaaaggaatggtagaaaatctcctcacagacttaaacctcaatgcatcaatcatagccttcca |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530485 |
tcaaattcttcctagaaatttcataactagcagcaagcaaaggaatgctagaaaatctcctcacagacttaaacctcaatgcatcaatcatagccttcca |
28530386 |
T |
|
| Q |
417 |
ttggtgccctccatctcctcctcctggtgatgatg |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
28530385 |
ttggtgccctccatctcctcctcctggtgatgatg |
28530351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 32332551 - 32332591
Alignment:
| Q |
63 |
ttgacttatatttgcttatatttaagaccggagtagtaatt |
103 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
32332551 |
ttgacttatttttgtttatatttgagaccggagtagtaatt |
32332591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University