View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6618_high_5 (Length: 328)
Name: NF6618_high_5
Description: NF6618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6618_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 54 - 310
Target Start/End: Complemental strand, 6070680 - 6070424
Alignment:
| Q |
54 |
aaataattaatttcagggagaaataatcctacaagaagaaattggtctgagctagttggtgtgacagcagaagaagcagagaggaaaataaaggaagaga |
153 |
Q |
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| T |
6070680 |
aaataattaatttcagggagaaataatccaacaagaagaaattggtctgagctagttggtgtgacagcagaagaagcagagaggaaaataaaggaagaga |
6070581 |
T |
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| Q |
154 |
tgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcgattgtatgttgatcaatctaataaggt |
253 |
Q |
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| T |
6070580 |
tgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcgattgtatgttgatcaatctaataagct |
6070481 |
T |
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| Q |
254 |
cattaagactccaacaattggttgattcatcaactaaatgttattcatctgagattt |
310 |
Q |
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| T |
6070480 |
cattaagactccaacaattggttgattcatcaactaaatattgttcaaatgagattt |
6070424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 6055702 - 6055961
Alignment:
| Q |
18 |
atattgaacatatattttggctttctcattaatataaaataattaatttcagggagaaataatcctacaagaagaaattggtctgagctagttggtgtga |
117 |
Q |
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| T |
6055702 |
atattgaacatatattttggctttctcattaatataaaataattaatttcagggagaaataatccaacaagaagaaattggtctgagctagttggtgtga |
6055801 |
T |
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| Q |
118 |
cagcagaagaagcagagaggaaaataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacaccca |
217 |
Q |
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| T |
6055802 |
cagcagaagaagcagagaggaaaataaaggaagagatgcatggagttgaaattcgagtggtgccacctggctattt--------caggtt-------caa |
6055886 |
T |
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| Q |
218 |
aagagttcgattgtatgttgatcaatctaataaggtcattaagactccaacaattggttgattcatcaactaaat |
292 |
Q |
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| T |
6055887 |
gagagttcgattgtatgttgatcaatctaataagctcattaagactccaacaattggttgattcatcaactaaat |
6055961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 68 - 292
Target Start/End: Complemental strand, 6085742 - 6085518
Alignment:
| Q |
68 |
agggagaaataatcctacaagaagaaattggtctgagctagttggtgtgacagcagaagaagcagagaggaaaataaaggaagagatgaatggagttgaa |
167 |
Q |
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| T |
6085742 |
agggacaaataaccctacaaaaacaagttggcctgagctagttggtgtcactgcagaagaagcagagagaaaaataaaggaagatatatctggagttgaa |
6085643 |
T |
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| Q |
168 |
attcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcgattgtatgttgatcaatctaataaggtcattaagactccaa |
267 |
Q |
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| T |
6085642 |
attcaagtggtgccccctgattcatttgttactgctgatttcaggttcaagagagttcgattgtatgttgatgaatctaataaggtcattaggactccaa |
6085543 |
T |
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| Q |
268 |
caattggttgattcatcaactaaat |
292 |
Q |
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| T |
6085542 |
taattggttgattcatcaactaaat |
6085518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 6035477 - 6035562
Alignment:
| Q |
70 |
ggagaaataatcctacaagaagaaattggtctgagctagttggtgtgacagcagaagaagcagagaggaaaataaaggaagagatg |
155 |
Q |
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| T |
6035477 |
ggagaaataaccctactaaaacaagttggccagagctagttggtgtcactgttgaagaagcaaagagaaaaataaaggaagagatg |
6035562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 6070737 - 6070699
Alignment:
| Q |
18 |
atattgaacatatattttggctttctcattaatataaaa |
56 |
Q |
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| T |
6070737 |
atattgaatatatattttggctttctcataaatataaaa |
6070699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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