View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6618_high_7 (Length: 243)
Name: NF6618_high_7
Description: NF6618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6618_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 3669284 - 3669512
Alignment:
| Q |
1 |
tcaatgaagaagaaagttgaaaggtctttggatgatggacaaattactcaaatagtatataaaggaagtcataaccatcctaagcctcagtgta---aga |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3669284 |
tcaatgaagaagaaagttgaaaggtctttggatgatggacaaattactcaaatagtatataaaggaagtcataaccatcctaagcctcagtgtacaaaga |
3669383 |
T |
|
| Q |
98 |
gaagagcaaattctcaaaatattcatcaaccttcttcatcatgcaacaactctatggtctctgatctttctttgggagaggatgattttgatcaaacatc |
197 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3669384 |
gaagagcaaattctcaatatattcatcaaccttcttcatcatgcaacaactctatggtctctgatctttctttgggagaggatgattttgatcaaacatc |
3669483 |
T |
|
| Q |
198 |
acaaactagtttttctggtggagattatg |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3669484 |
acaaactagtttttctggtggagattatg |
3669512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 26332529 - 26332419
Alignment:
| Q |
1 |
tcaatgaagaagaaagttgaaaggtctttggatgatggacaaattactcaaatagtatataaaggaagtcataaccatcctaagcctcagtgtaagagaa |
100 |
Q |
| |
|
||||||||||||||||| || ||| |||||||| |||| |||||| |||| |||||||| |||| ||||||||| ||||||||||||| ||| |||| |
|
|
| T |
26332529 |
tcaatgaagaagaaagtcgagagggatttggatg---gacagattactgaaattgtatataagggaactcataaccaccctaagcctcagtctaatagaa |
26332433 |
T |
|
| Q |
101 |
gagcaaattctcaa |
114 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
26332432 |
gaacaaactctcaa |
26332419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 26967008 - 26966955
Alignment:
| Q |
34 |
gatggacaaattactcaaatagtatataaaggaagtcataaccatcctaagcct |
87 |
Q |
| |
|
||||||||||||||| | ||||| || ||||| |||||||| |||||||||||| |
|
|
| T |
26967008 |
gatggacaaattactgagatagtttacaaaggtagtcataatcatcctaagcct |
26966955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University