View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6618_low_2 (Length: 512)

Name: NF6618_low_2
Description: NF6618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6618_low_2
NF6618_low_2
[»] chr1 (2 HSPs)
chr1 (311-468)||(34917341-34917498)
chr1 (304-466)||(34024741-34024903)
[»] chr8 (4 HSPs)
chr8 (314-468)||(20266147-20266301)
chr8 (314-468)||(21052776-21052930)
chr8 (306-467)||(15362402-15362563)
chr8 (309-466)||(18166284-18166441)
[»] chr4 (5 HSPs)
chr4 (303-468)||(27366379-27366544)
chr4 (308-468)||(45113282-45113442)
chr4 (311-467)||(48944969-48945125)
chr4 (313-466)||(30200726-30200879)
chr4 (309-429)||(1838749-1838869)
[»] chr7 (3 HSPs)
chr7 (308-468)||(21868182-21868342)
chr7 (311-410)||(4057863-4057962)
chr7 (307-466)||(47022921-47023083)
[»] chr3 (4 HSPs)
chr3 (148-293)||(52452714-52452858)
chr3 (317-467)||(34147421-34147569)
chr3 (311-412)||(28983925-28984026)
chr3 (380-434)||(54298634-54298688)
[»] chr5 (4 HSPs)
chr5 (312-468)||(7955094-7955250)
chr5 (314-417)||(1592512-1592615)
chr5 (311-421)||(7771183-7771293)
chr5 (379-419)||(32470247-32470287)
[»] chr2 (2 HSPs)
chr2 (311-468)||(12335725-12335882)
chr2 (313-465)||(604242-604393)
[»] chr6 (2 HSPs)
chr6 (379-434)||(28888171-28888226)
chr6 (375-419)||(21091508-21091552)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 311 - 468
Target Start/End: Original strand, 34917341 - 34917498
Alignment:
Q  311 agggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 410  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34917341 agggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacc 34917440  T
Q  411 caggaataaatgattcccaggaatcttatttacccgttcactctctatttttattccc 468  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34917441 caggaataaatgattcccaggaatcttatttacccgttgactctctatttttattccc 34917498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 304 - 466
Target Start/End: Original strand, 34024741 - 34024903
Alignment:
Q  304 aaatctaagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaata 403  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||    
T  34024741 aaatctaagggggtgtttgtttgggagataaaaaatatattcctgggaataaaggtattaaatacgatattcctatgtttggtagaagggaacaaaaata 34024840  T
Q  404 atatacccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattc 466  Q
    |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  34024841 atatactcaggaataaatgattctcaggaatcttatttacccgttgactctctatttttattc 34024903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 314 - 468
Target Start/End: Original strand, 20266147 - 20266301
Alignment:
Q  314 gggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccag 413  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20266147 gggtgtttgtttgggagataaaaaatatatttctaggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccag 20266246  T
Q  414 gaataaatgattcccaggaatcttatttacccgttcactctctatttttattccc 468  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  20266247 gaataattgattcccaggaatcttatttacccgttgactctctatttttattccc 20266301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 314 - 468
Target Start/End: Original strand, 21052776 - 21052930
Alignment:
Q  314 gggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccag 413  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21052776 gggtgtttgtttgggagataaaaaatatatttctaggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccag 21052875  T
Q  414 gaataaatgattcccaggaatcttatttacccgttcactctctatttttattccc 468  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  21052876 gaataattgattcccaggaatcttatttacccgttgactctctatttttattccc 21052930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 306 - 467
Target Start/End: Original strand, 15362402 - 15362563
Alignment:
Q  306 atctaagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataat 405  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  15362402 atctaagggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataat 15362501  T
Q  406 atacccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcc 467  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  15362502 atacccaggaataaatgattcccaggaatcttatttatccgttgactctctatttttattcc 15362563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 309 - 466
Target Start/End: Original strand, 18166284 - 18166441
Alignment:
Q  309 taagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatata 408  Q
    ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18166284 taagggggtgtttgtttgggagataaaaaatatattcctgtgaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatata 18166383  T
Q  409 cccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattc 466  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  18166384 cccaagaataaatgattcacaggaatcttatttacccgttgactctctatttttattc 18166441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 303 - 468
Target Start/End: Complemental strand, 27366544 - 27366379
Alignment:
Q  303 taaatctaagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaat 402  Q
    ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27366544 taaatataagggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaat 27366445  T
Q  403 aatatacccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattccc 468  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  27366444 aatatacccaggaataaatgattttcaggaatcttatttacccgttgactctctatttttattccc 27366379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 308 - 468
Target Start/End: Complemental strand, 45113442 - 45113282
Alignment:
Q  308 ctaagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatat 407  Q
    |||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45113442 ctaagggggtgtttgtttgggagataaaaaatatattcctgagaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatat 45113343  T
Q  408 acccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattccc 468  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  45113342 acccaggaataaatgatttccaggaatcttatttacccgttgactctctatttttattccc 45113282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 311 - 467
Target Start/End: Complemental strand, 48945125 - 48944969
Alignment:
Q  311 agggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 410  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48945125 agggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 48945026  T
Q  411 caggaataaatgattcccaggaatcttatttacccgttcactctctatttttattcc 467  Q
    |||||||||||||||||||||||||||||| |||| || ||||||||||||||||||    
T  48945025 caggaataaatgattcccaggaatcttattaacccattgactctctatttttattcc 48944969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 313 - 466
Target Start/End: Complemental strand, 30200879 - 30200726
Alignment:
Q  313 ggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatataccca 412  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  30200879 ggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatactca 30200780  T
Q  413 ggaataaatgattcccaggaatcttatttacccgttcactctctatttttattc 466  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  30200779 ggaataaatgattctcaggaatcttatttacccgttgactctctatttttattc 30200726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 309 - 429
Target Start/End: Complemental strand, 1838869 - 1838749
Alignment:
Q  309 taagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatata 408  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  1838869 taagggggtgtttgtttgggagataaaaaatatatttctaggaataagggcattaaatacgatattcctatatttggtagaagggaacaaaaataatata 1838770  T
Q  409 cccaggaataaatgattccca 429  Q
    |||||||||||||||||||||    
T  1838769 cccaggaataaatgattccca 1838749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 308 - 468
Target Start/End: Complemental strand, 21868342 - 21868182
Alignment:
Q  308 ctaagggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatat 407  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21868342 ctaagggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatat 21868243  T
Q  408 acccaggaataaatgattcccaggaatcttatttacccgttcactctctatttttattccc 468  Q
    ||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  21868242 acctaggaataaatgattcctaggaatcttatttacccgttgactctctatttttattccc 21868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 311 - 410
Target Start/End: Original strand, 4057863 - 4057962
Alignment:
Q  311 agggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 410  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4057863 agggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 4057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 307 - 466
Target Start/End: Original strand, 47022921 - 47023083
Alignment:
Q  307 tctaagggggtgtttgtttggaagata---aaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaata 403  Q
    ||||| ||||||||||||||| |||||   ||||||||||| ||| ||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||    
T  47022921 tctaacggggtgtttgtttgggagatagtaaaaaatatattactgagaataagggtattaaatacaatattcctatatttggtagaagggaacaaaaata 47023020  T
Q  404 atatacccaggaat-aaatgattcccaggaatcttatttacccgttcactctctatttttattc 466  Q
    |||||||||||||| |||||||||||| |||||||||| | ||||| |||||||||||||||||    
T  47023021 atatacccaggaataaaatgattccca-gaatcttattaatccgttgactctctatttttattc 47023083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 148 - 293
Target Start/End: Complemental strand, 52452858 - 52452714
Alignment:
Q  148 ccaaatcatattatttcttcttctttaatttgctgtatgcttgactgagcaagtggataatagccaggtacttccaaataaagaatctagaataactata 247  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52452858 ccaaatcatattatttct-cttctttaatttgctgtatgcttgactgagcaagtggatattagccaggtacttccaaataaagaatctagaataactata 52452760  T
Q  248 cgatgtttgtgttcctgtttattttctttttaaattggtcccatat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  52452759 cgatgtttgtgttcctgtttattttctttttaaattggtcccatat 52452714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 317 - 467
Target Start/End: Original strand, 34147421 - 34147569
Alignment:
Q  317 tgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccaggaa 416  Q
    ||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  34147421 tgtttgtttgggagataaaaaatatattcctgggaataatggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacctaggaa 34147520  T
Q  417 taaatgattcccaggaatcttatttacccgttcactctctatttttattcc 467  Q
    |||||||||||||||||||||||| |||| || |  |||||||||||||||    
T  34147521 taaatgattcccaggaatcttattaacccattga--ctctatttttattcc 34147569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 28984026 - 28983925
Alignment:
Q  311 agggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 410  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  28984026 agggggtgtttgtttgggagataaaaaatatatttatgagaataagggcattaaatacgatattcctatgtttggtagaagcgaacaaaaaaaatatacc 28983927  T
Q  411 ca 412  Q
    ||    
T  28983926 ca 28983925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 54298634 - 54298688
Alignment:
Q  380 gtttggtagaagggaacaaaaataatatacccaggaataaatgattcccaggaat 434  Q
    ||||||||||| |||||||||||||||| || |||||||||| || || ||||||    
T  54298634 gtttggtagaaaggaacaaaaataatatgcctaggaataaataataccaaggaat 54298688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 6e-69; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 312 - 468
Target Start/End: Original strand, 7955094 - 7955250
Alignment:
Q  312 gggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatataccc 411  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  7955094 gggggtgtttgtttgggagataaaaaatatattcctgggtataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataatataccc 7955193  T
Q  412 aggaataaatgattcccaggaatcttatttacccgttcactctctatttttattccc 468  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7955194 aggaataaatgattcccaggaatcttatttacccgttgactctctatttttattccc 7955250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 314 - 417
Target Start/End: Original strand, 1592512 - 1592615
Alignment:
Q  314 gggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacccag 413  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  1592512 gggtgtttgtttgggagataaaaaatatatttctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatatacccat 1592611  T
Q  414 gaat 417  Q
    ||||    
T  1592612 gaat 1592615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 311 - 421
Target Start/End: Complemental strand, 7771293 - 7771183
Alignment:
Q  311 agggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 410  Q
    ||||||||||||||||| ||||||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  7771293 agggggtgtttgtttgggagataaaaaatatattcttaggaataaggacattaaatacgatatttctatgtttggtagaaggaaacaaaaataatatact 7771194  T
Q  411 caggaataaat 421  Q
    ||| |||||||    
T  7771193 cagaaataaat 7771183  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 32470287 - 32470247
Alignment:
Q  379 tgtttggtagaagggaacaaaaataatatacccaggaataa 419  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  32470287 tgtttggtagaaaggaacaaaaataatatacctaggaataa 32470247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 311 - 468
Target Start/End: Original strand, 12335725 - 12335882
Alignment:
Q  311 agggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatatacc 410  Q
    ||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  12335725 agggggtgtttgtttgggagataaaaaatatattcctggaaataagagcattaaatatgatattcctatgtttggtagaagggaacaaaaataatatacc 12335824  T
Q  411 caggaataaatgattcccaggaatcttatttacccgttcactctctatttttattccc 468  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12335825 caggaataaatgattcccaggaatcttatttacccgttgactctctatttttattccc 12335882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 313 - 465
Target Start/End: Complemental strand, 604393 - 604242
Alignment:
Q  313 ggggtgtttgtttggaagataaaaaatatatttctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatataccca 412  Q
    ||||||||||||||| ||| ||||||||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||    
T  604393 ggggtgtttgtttgggaga-aaaaaatatatttatgagaataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataatatactca 604295  T
Q  413 ggaataaatgattcccaggaatcttatttacccgttcactctctatttttatt 465  Q
    |||||||||||||  ||||||||||||||||| ||| ||||||||||||||||    
T  604294 ggaataaatgattttcaggaatcttatttacctgttgactctctatttttatt 604242  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 28888226 - 28888171
Alignment:
Q  379 tgtttggtagaagggaacaaaaataatatacccaggaataaatgattcccaggaat 434  Q
    |||||||||||| ||||||||||||||||||||| |||||||| || |||||||||    
T  28888226 tgtttggtagaaaggaacaaaaataatatacccaagaataaataatacccaggaat 28888171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 21091508 - 21091552
Alignment:
Q  375 tctatgtttggtagaagggaacaaaaataatatacccaggaataa 419  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||    
T  21091508 tctatgtttggtagaaaggaacaaaaataatatacctaggaataa 21091552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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