View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6618_low_9 (Length: 228)
Name: NF6618_low_9
Description: NF6618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6618_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7897039 - 7897129
Alignment:
| Q |
1 |
aatgcaaaacatcttacttcctctctctctcaacaacgatccaaagcactcataatcaccctgcaatataaaacattaagaaaagttagac |
91 |
Q |
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| T |
7897039 |
aatgcaaaacatcttacttcctctctctctcaacaacgatccaaagcactcataatcaccctgcaatataaaacattaagaaaagttagac |
7897129 |
T |
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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 7897196 - 7897259
Alignment:
| Q |
157 |
agataaccaatcggaaatagtcggacttcgataatcggagctctccgatggatccccctatgct |
220 |
Q |
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| T |
7897196 |
agataaccaatcggaaatagtcggacttcgataatcggagctctccgatggatcccccgatgct |
7897259 |
T |
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