View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6619_high_19 (Length: 330)
Name: NF6619_high_19
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_high_19 |
 | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0021 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 150548 - 150848
Alignment:
| Q |
11 |
cagagagctttgaagaaggaatcaaaaagtatgcagataattcagtgagctctacaaagtatactcttgctacatttttgccgaagtcattgtttgaaca |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
150548 |
cagagagctttgaagaaggaattaaaaagtatgcagataattcagtgagctctacaaagtatactcttgctacatttttgccgaagtcattgtttgaaca |
150647 |
T |
|
| Q |
111 |
gtttaggagagtggctaatttctattttttggtaactggtactttgtcatttacaaagcttgctccttatactgctgttagtgctatccttcctttggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
150648 |
gtttaggagagtggctaatttctattttttggtaactggtactttgtcatttacaaagcttgctccttatactgctgttagtgctatccttcctttggtt |
150747 |
T |
|
| Q |
211 |
gttgttattggtgctactatggtgaaagagggtatcgaagattggcgtcgcaaaaagcaggtaggtactacattatcatcaccaattctatttgttttca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
150748 |
gttgttattggtgctactatggtgaaagagggtatcgaagattggcgtcgcaaaaagcaggtaggtactacattatcatcaccaattctatttgttttca |
150847 |
T |
|
| Q |
311 |
a |
311 |
Q |
| |
|
| |
|
|
| T |
150848 |
a |
150848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 42 - 273
Target Start/End: Complemental strand, 29593156 - 29592925
Alignment:
| Q |
42 |
tgcagataattcagtgagctctacaaagtatactcttgctacatttttgccgaagtcattgtttgaacagtttaggagagtggctaatttctattttttg |
141 |
Q |
| |
|
||||||||||| || || |||||||| |||||| ||| || || || || || ||| | |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
29593156 |
tgcagataattatgttagatctacaaaatatactgctgcaactttctttccaaaatcactttttgaacagtttaggagagttgcaaatttctattttttg |
29593057 |
T |
|
| Q |
142 |
gtaactggtactttgtcatttacaaagcttgctccttatactgctgttagtgctatccttcctttggttgttgttattggtgctactatggtgaaagagg |
241 |
Q |
| |
|
|| |||||| |||| | || ||||| ||||||||||||| ||||||| |||||| |||||| | |||||||||||||| || ||||| |||||||| | |
|
|
| T |
29593056 |
gttactggtgttttggctttcacaaaacttgctccttatagagctgttactgctattcttcctcttgttgttgttattggagcaactattgtgaaagaag |
29592957 |
T |
|
| Q |
242 |
gtatcgaagattggcgtcgcaaaaagcaggta |
273 |
Q |
| |
|
|||| |||||||||||| | |||||||||||| |
|
|
| T |
29592956 |
gtattgaagattggcgtaggaaaaagcaggta |
29592925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 273
Target Start/End: Original strand, 13704628 - 13704861
Alignment:
| Q |
40 |
tatgcagataattcagtgagctctacaaagtatactcttgctacatttttgccgaagtcattgtttgaacagtttaggagagtggctaatttctattttt |
139 |
Q |
| |
|
||||| |||||||| || || || ||||| |||||| ||||||| || || || |||||||||||||| ||||||||||| || |||||||||| ||| |
|
|
| T |
13704628 |
tatgctgataattctgttaggtcaacaaaatatacttttgctactttcttacctaagtcattgtttgagcagtttaggagggtagctaatttctttttcc |
13704727 |
T |
|
| Q |
140 |
tggtaactggtactttgtcatttacaaagcttgctccttatactgctgttagtgctatccttcctttggttgttgttattggtgctactatggtgaaaga |
239 |
Q |
| |
|
| || |||||| || | || ||||| ||||||||||||||||||||||||||||| |||||||| | |||| | ||||||| ||||||||||| || |
|
|
| T |
13704728 |
ttgttgctggtatcttagctttcacaaaacttgctccttatactgctgttagtgctattcttcctttagctgttatagttggtgcaactatggtgaagga |
13704827 |
T |
|
| Q |
240 |
gggtatcgaagattggcgtcgcaaaaagcaggta |
273 |
Q |
| |
|
||||| ||||||| ||||| ||||| |||||| |
|
|
| T |
13704828 |
aggtattgaagattttcgtcggaaaaaacaggta |
13704861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University