View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_high_2 (Length: 561)
Name: NF6619_high_2
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 552
Target Start/End: Original strand, 29569263 - 29569791
Alignment:
| Q |
18 |
aaaagtttgtgagtgttccaaaggcaatatctgttgcaaggtcttgtggagtgaagcttccagcaggaatgcaatgtggatgtaagatattcttctattc |
117 |
Q |
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| T |
29569263 |
aaaagtttgtgagtgttccaaaggcaatatctgttgcaaggtcttgtggagtgaagcttccagcaggaatgcaatgtggatgtaagatattcttctattc |
29569362 |
T |
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| Q |
118 |
atttgatttgaaaatgtttgttttgaatcataaatattttgagaaagaaaactgacaaaacttgtgatgacattgtttgtttcagctattagaatcccac |
217 |
Q |
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| T |
29569363 |
atttgatttgaaaatgtttgttttgaatcataaatattttgagaaagaaaactgacaaaacttgtgatgacattgtttgtttcagctattagaatcccac |
29569462 |
T |
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| Q |
218 |
caaaagccatatgaagtgatcaacgaattgaaaacgcagcttttgtattggcaataaaataaagcactttccattttatgtaaagacacaaataaataac |
317 |
Q |
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| T |
29569463 |
cgaaagccatatgaagtgatcaacgaattgaaaacgcagcttttgtattggc-----aataaagcactttccattttatgtaaagacacaaataaataac |
29569557 |
T |
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| Q |
318 |
taaataaataattctccatatcacattgttatgtgttcatggtagaactgtgtctaatggaatgtatggaaattgttagtgcatgtatgatatctaattt |
417 |
Q |
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| T |
29569558 |
taaataaataattctccatatcacattgttatgtgttcatggtagaactgtgtctaatggaatgtatggaaattgttagtgcatgtatg--atctaatat |
29569655 |
T |
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| Q |
418 |
c-nnnnnnnatatgtaagttgtataatcgaagatcgaatttaaaagttttatatcatgtgtcagtgtgtcactctctcaattaattattttagctctcat |
516 |
Q |
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| T |
29569656 |
cttttttttatatgtaagttgtataatcgaagatcgaatttaaaagttttatatcatgcgtcagtgtgtcactctctcaattaattattttagctctcat |
29569755 |
T |
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| Q |
517 |
acacaagaataaaaataggcacacgttcatctctgc |
552 |
Q |
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| T |
29569756 |
acacaagaataaaaataggcatacgttcatctctgc |
29569791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 29142755 - 29142668
Alignment:
| Q |
18 |
aaaagtttgtgagtgttccaaaggcaatatctgttgcaaggtcttgtggagtgaagcttccagcaggaatgcaatgtggatgtaagat |
105 |
Q |
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| T |
29142755 |
aaaagtttgtgagtgttcaaaaagcaatatctgttgcaaggtcttgcggattgaaagttccagcaggaatgcaatgtggatgtaagat |
29142668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 29142563 - 29142473
Alignment:
| Q |
149 |
aaatattttgagaaagaaaactgacaaaacttgtgatgacattgtttgtttcagctattagaatcccaccaaaagccatatgaagtgatcaac |
241 |
Q |
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| T |
29142563 |
aaatattttgaaaaagaaaactgatgaaacttgtgattacattatttgtttcagctgttagagtgcctccaaaagcc--atgaagtgatcaac |
29142473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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