View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_high_24 (Length: 314)
Name: NF6619_high_24
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 49028944 - 49028646
Alignment:
| Q |
1 |
tccgccaccgtctctgctccctccgattccgcgttcaagaaatccggtcaaccttcactcgatcttcttcgtttccacttcgtcatgttaccgcttccgc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49028944 |
tccgccaccgtctttgctccctccgattccgcgttcaagaaatccggtcaaccttcactcgatcttcttcgtttccacttcgtcatgttaccgcttccgc |
49028845 |
T |
|
| Q |
101 |
agcaaagcttacgccgtcttcccgccggcgctaagcttccgacgatgcttaccggtcagtcgctaaccgtcactacatcattctccgatcgattgacctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49028844 |
agcaaagcttacgccgtcttcccgccggcgctaagcttccgacgatgcttaccggtcagtcgctaaccgtcactacatcattctccgatcgcgtgacctc |
49028745 |
T |
|
| Q |
201 |
tgttaactatatcaagatcaacggaacgcctatctacgacgacggatttcttcttgtttacggaatcgattgatttttcgttcctaattttcagtacac |
299 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
49028744 |
tgttaacaatatcaagatcaacggaacgccgatctacgacgacggagttcttcttgtttacggaatcgatagatttttcgatcctaattttcagtacac |
49028646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 32804130 - 32803832
Alignment:
| Q |
1 |
tccgccaccgtctctgctccctccgattccgcgttcaagaaatccggtcaaccttcactcgatcttcttcgtttccacttcgtcatgttaccgcttccgc |
100 |
Q |
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||||||||| ||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||| || ||||||||||| |||||||| |||| |
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| T |
32804130 |
tccgccaccatcttcgctccctccgattcagcgttcaagaaatctggtcaaccatcactcgatcttcttctctttcacttcgtcatcttaccgctcccgc |
32804031 |
T |
|
| Q |
101 |
agcaaagcttacgccgtcttcccgccggcgctaagcttccgacgatgcttaccggtcagtcgctaaccgtcactacatcattctccgatcgattgacctc |
200 |
Q |
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|||||||| | || ||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||| || | ||||||||| |||| || |
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| T |
32804030 |
agcaaagcctccggcgtcttcccgctggcactaagcttccaacgatgctcaccggtcagtcgctaaccgtcactacctcttcctccgatcgcgtgacatc |
32803931 |
T |
|
| Q |
201 |
tgttaactatatcaagatcaacggaacgcctatctacgacgacggatttcttcttgtttacggaatcgattgatttttcgttcctaattttcagtacac |
299 |
Q |
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||||||| ||||||| |||| ||| | || ||||||||| | ||| |||| ||||||||||||| ||| |||| || | ||||| |||||||||||| |
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| T |
32803930 |
tgttaacaatatcaaaatcattggatctccgatctacgacaatggagttctctttgtttacggaatagatagattcttggatcctagttttcagtacac |
32803832 |
T |
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