View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_high_3 (Length: 550)
Name: NF6619_high_3
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 31 - 539
Target Start/End: Original strand, 7108631 - 7109135
Alignment:
| Q |
31 |
tatggttttctggaccccttgataaggtctagcttaccttcatccaccaatctagaaatacttctgctcatcacctctttggcaaaacataaaaggagag |
130 |
Q |
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| T |
7108631 |
tatggttttctggaccccttgataaggtctagcttaccttcatccaccaatctagaaatacctctgctcatcacctctttggcaaaacataaaaggagag |
7108730 |
T |
|
| Q |
131 |
gagagatagatacagtattcctgcctcacccctctcttacaatgaaaataatcatgaagcttatcattgagagaaattatcagagaatatgagtttaaaa |
230 |
Q |
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| T |
7108731 |
gagagat----acagtattcctgcctcacccctctcttacaatgaaaataatcatgaagcttatcattgagagaaattatcagacaatatgagtttaaaa |
7108826 |
T |
|
| Q |
231 |
tgacctctatccaattacaaatgttttcattaaaaccaaaagctttcaaaatcttcaaaagaaattttcattccacagtgtcaaaagctttataaatgtc |
330 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7108827 |
tgacctctatccaattccaaatgttttcattaaaaccaaaagctttcaaaatcttcaaaagaaattttcattccacagtgtcaaaagctttataaatgtc |
7108926 |
T |
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| Q |
331 |
tattttaagggcaagattacctccaaaagatctattatggagaagatcggttgcctctcaagtgaggttgatacactctttgatttgtctttgttgaata |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
7108927 |
tattttaagggcaagattacctccaaaagatctattatggcgaagatcgggtgcctctcaagtgaggttgatgcactctttgatttgtctgtgttgaata |
7109026 |
T |
|
| Q |
431 |
aatcctctttgatgattagaaatgaggttaggcatgattctagctaacctttcagcaatcactttggttataattttaaacttgaagttatctaaagcta |
530 |
Q |
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||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7109027 |
aattctctttgctgcttagaaatgaggttaggcatgattctagctaacctttcagcaatcactttggttataattttaaacttgaagttatctaaagcta |
7109126 |
T |
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| Q |
531 |
taggcctat |
539 |
Q |
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|||| |||| |
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| T |
7109127 |
taggtctat |
7109135 |
T |
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