View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_high_30 (Length: 252)
Name: NF6619_high_30
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31807462 - 31807690
Alignment:
| Q |
1 |
ttagaataagcttaatacttgttaaggaagtagaagttaattgtgattagttagaagtttgttatataagttaattacattaagatcattatgtaaattg |
100 |
Q |
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| T |
31807462 |
ttagaataagcttaatacttgttaaggaagtagaagttagttgtgattagttagaagtttgttatataagttaattacattaagatcattatgtaaattg |
31807561 |
T |
|
| Q |
101 |
aatcctactaacagtctatcaacttcttcatactactgttgaaattcatgtggtaggaacaacattgaggagagttgatcctactacttcatggtatttc |
200 |
Q |
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| T |
31807562 |
aatcctactaacagtctatcaacttcttcatattactgttgaaattcatgtggtaggaacaacattgaggagagttgatcctactacttcatggtatttc |
31807661 |
T |
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| Q |
201 |
ttttgtcaatgaagcacttcattggatcc |
229 |
Q |
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| T |
31807662 |
ttttgtcaatgaagcacttcattggatcc |
31807690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 25290957 - 25291088
Alignment:
| Q |
1 |
ttagaataagcttaatacttgttaaggaagtagaagttaattgtgattagttagaagtttgttatataagttaattacattaagatcattatgtaaattg |
100 |
Q |
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| T |
25290957 |
ttagaattagcttaatacttgttaaggaagtagaagttagttgtgattagttagaagttttttatataagttaattacattaagatcattatgtaaattg |
25291056 |
T |
|
| Q |
101 |
aatcctactaacagtctatcaacttcttcata |
132 |
Q |
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| T |
25291057 |
aatcctactaacagtctatgaacttcttcata |
25291088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 25291421 - 25291471
Alignment:
| Q |
136 |
ctgttgaaattcatgtggtaggaacaacattgaggagagttgatcctacta |
186 |
Q |
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| T |
25291421 |
ctgttgaaattcatgtagcaggaacaacatggaggagacttgattctacta |
25291471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 5584661 - 5584707
Alignment:
| Q |
137 |
tgttgaaattcatgtggtaggaacaacattgaggagagttgatccta |
183 |
Q |
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| T |
5584661 |
tgttgaaattcatgtggtaggaacaacatggaggagactttatccta |
5584707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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