View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_high_34 (Length: 239)
Name: NF6619_high_34
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_high_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 31806907 - 31807123
Alignment:
| Q |
23 |
ttgatcaaagggactcaatcaaatttttgtttttggaatggcaaaggagacttaatcccttttgtgtgctttattttaattttgattgagnnnnnnnngt |
122 |
Q |
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| T |
31806907 |
ttgatcaaagggactcaatcaaatttttgtttttggaatggcaaaggagacttaatcccttttgtgtgctttattttaatttttattgagttttttttgt |
31807006 |
T |
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| Q |
123 |
acctcagggtgtggctatggaaaggaaaagtggcttaatcccttctcccagggctaataaaagaggcaaaacagggaaagaaaaagttgatgaagtagaa |
222 |
Q |
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| T |
31807007 |
acctcagtgtgtggctatggaaaggaaaagtggcttaatcccttctcccagggctaaaaaaaaagccaaaacagggaaagaaaaagttgatgaagtagaa |
31807106 |
T |
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| Q |
223 |
attcaagaactcagccc |
239 |
Q |
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| T |
31807107 |
attcaagaacttagccc |
31807123 |
T |
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Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 25290397 - 25290609
Alignment:
| Q |
23 |
ttgatcaaagggactcaatcaaatttttgtttttggaatggcaaaggagacttaatccc-ttttgtgtgctttattttaattttgattgagnnnnnnnn- |
120 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || |||||||||||||| |||||| |
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| T |
25290397 |
ttgaccaaagggactcaatcaaatttttgtttttggaatggcaaaggggacttaatccccttttgtttgatttattttaatttttattgagttttttttt |
25290496 |
T |
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| Q |
121 |
gtacctcagggtgtggctatggaaaggaaaagtggcttaatcccttctcccagggctaataaaagaggcaaaacagggaaagaaaaagttgatgaagtag |
220 |
Q |
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| T |
25290497 |
gtacctcagtgtgtggctatggaaaggaaaagaagcttaatcccttctccaagggatacgaaaagaggcaaaacagggaaagaaaaagttgatgtagtag |
25290596 |
T |
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| Q |
221 |
aaattcaagaact |
233 |
Q |
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||| ||||||||| |
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| T |
25290597 |
aaactcaagaact |
25290609 |
T |
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