View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_high_8 (Length: 433)
Name: NF6619_high_8
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 94 - 423
Target Start/End: Original strand, 9418839 - 9419168
Alignment:
| Q |
94 |
caagtgtgatggtattccaagtgattgttatatttatattcagctatccaccaagtgtgaaactctgtttgtacacttaacaatgttctattttaattgt |
193 |
Q |
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| T |
9418839 |
caagtgtgatggtattccaagtgattgttatatttatattcagctatccaccaagtgtgaaactctatttgtacacttaacaatgttctattttaattgt |
9418938 |
T |
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| Q |
194 |
ttaacctggataaaataaaatgagtacacacattgactttgaattgattcatgcagggctcgtgtaacaagatggagggaagacttgacatggtatattg |
293 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9418939 |
ttaaccttgataaaataaaatgagtacacacattgactttaaattgattcatgcagggctcgtgtaacaagatggagggaagacttgacatggtatattg |
9419038 |
T |
|
| Q |
294 |
attaaaatagtactgcaaaataaaagactaaatgaaaagatatatcctttaagtgactgtttttgtgtaatgtttcaggattagattatatattgtctag |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9419039 |
attaaaatagtactgcaaaataaaagactaaatgaaaagatatatcctttaagtgactgtttttgtgtaatgtttcaggattagattatatattgtctag |
9419138 |
T |
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| Q |
394 |
acatgcatgaagggaacccataaacctatg |
423 |
Q |
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| T |
9419139 |
acatgcatgaagggaacccataaacctatg |
9419168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 94 - 329
Target Start/End: Complemental strand, 12001267 - 12001033
Alignment:
| Q |
94 |
caagtgtgatggtattccaagtgattgttatatttatattcagctatccaccaagtgtgaaactctgtttgtacacttaacaatgttctattttaattgt |
193 |
Q |
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| T |
12001267 |
caagtgtgatggtattccaagtgattgttatatttatattcagctatccaccaagtgtgaaactctgtttgtacacttaacaatgttctattttaattat |
12001168 |
T |
|
| Q |
194 |
ttaacctggataaaataaaatgagtacacacattgactttgaattgattcatgcagggctcgtgtaacaagatggagggaagacttgacatggtatattg |
293 |
Q |
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| T |
12001167 |
tcaaccttgataaaa-aaaatgagtacacacattgactttgaattgattcatgcagggctcgtgtaacaagatggagggaagacttgacatggtatattg |
12001069 |
T |
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| Q |
294 |
attaaaatagtactgcaaaataaaagactaaatgaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12001068 |
attaaaatagtactgcaaaataaaagactaaatgaa |
12001033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 98 - 423
Target Start/End: Original strand, 17814532 - 17814860
Alignment:
| Q |
98 |
tgtgatggtattccaagtgattgttatatttatattcagctatcca---ccaagtgtgaaactctgtttgtacacttaacaatgttctattttaattgtt |
194 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||||||| |||||||||||| | |||||||| || |
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| T |
17814532 |
tgtgaaggtattccaagtgactgttatatttatattcaactatatatccccaagtgtgaaactctgtttgtacccttaacaatgtttt-ttttaattatt |
17814630 |
T |
|
| Q |
195 |
taacctggataaaataaaatgagtacacacattgactttgaattgattcatgcagggctcgtgtaacaagatggagggaagacttga-catggtatattg |
293 |
Q |
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|||||| |||||||||||| |||| ||||||||||||||| |||| |||||||| |||| ||||||||| |||||||| |||| ||||||||||| |
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| T |
17814631 |
taaccttaataaaataaaataagtatacacattgactttgagttgactcatgcagcgctcacataacaagatagagggaaggcttgggcatggtatatta |
17814730 |
T |
|
| Q |
294 |
attaaaatagtactgcaaaataaaagactaaatgaaaagatatatcctttaagtgactgtttttgtgtaatgtttcaggattagattatatattgtctag |
393 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
17814731 |
ataaaaatagtactgcaaaataaaagactaaattaaaagatatattctttaagtgactgtttttgtgtagtatttcaggattagattatatattgtctaa |
17814830 |
T |
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| Q |
394 |
acatgcatgaagggaacccataaacctatg |
423 |
Q |
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|| |||||||| |||||||||||||||||| |
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| T |
17814831 |
acctgcatgaaaggaacccataaacctatg |
17814860 |
T |
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