View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_high_9 (Length: 422)
Name: NF6619_high_9
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 43023940 - 43024329
Alignment:
| Q |
16 |
atagtgtgaagagacaaatcccaatcaatactgctgtgccaagaaaacgatccatcagaggcgcaagttagtagagatcaacatcgcacttggtgggcac |
115 |
Q |
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| T |
43023940 |
atagtgtgaagagacaaatcccaatcaatactgctgtgccaagaaaacgatccatcagaggcgcaagttagtagagatcaacatcgcacttggtgggcac |
43024039 |
T |
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| Q |
116 |
aagctgagtggaggtattcttagaattcaaaggaactttgaggtcacatttcactttcggattgatacgaccaaatatcacattcccgagtctgaatcta |
215 |
Q |
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| T |
43024040 |
aagctgagtgaaggtattcttagaattcaaaggaactttgaggtcacatttcactttcggattgatacgaccaaatatcacattcccgagtctgaatcta |
43024139 |
T |
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| Q |
216 |
atttcgaagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagcatcaataaccgttgtc |
315 |
Q |
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| T |
43024140 |
atttcgaagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagcatcaataaccgttgtc |
43024239 |
T |
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| Q |
316 |
ctgagaaaacaccgctcataggatcactgctcttcttaaattggcggaatgaattcatggctgtgatcacatccacattcgccaaccttg |
405 |
Q |
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| T |
43024240 |
ctgagaaaacaccgctcataggatcactgctcttcttaaattggcggaatgaattcatagctgtgatcacatccacattcgccaaccttg |
43024329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 135 - 405
Target Start/End: Original strand, 43049210 - 43049480
Alignment:
| Q |
135 |
ttagaattcaaaggaactttgaggtcacatttcactttcggattgatacgaccaaatatcacattcccgagtctgaatctaatttcgaagtagagtttca |
234 |
Q |
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| T |
43049210 |
ttagaactcaaaggaactttgaagtcacatttcaccttaggcttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaaagtaaagcctca |
43049309 |
T |
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| Q |
235 |
catagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagcatcaataaccgttgtcctgagaaaacaccgctcat |
334 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||||||| || | ||||||||||||||||| | ||||| |
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| T |
43049310 |
catagatatcataaacttcatcactcttgtctttgttaaactcggagacttgatcgctgtcgagcacgaaaacatgttgtcctgagaaaacagcactcat |
43049409 |
T |
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| Q |
335 |
aggatcactgctcttcttaaattggcggaatgaattcatggctgtgatcacatccacattcgccaaccttg |
405 |
Q |
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| T |
43049410 |
ggggttgctgctcttcttgtattggcgaaatgagttcatgtgtgtgatcacatcaacattggcaaaccttg |
43049480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 43054831 - 43054915
Alignment:
| Q |
222 |
aagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagcatcaata |
306 |
Q |
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| T |
43054831 |
aagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaata |
43054915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 394
Target Start/End: Original strand, 43062081 - 43062254
Alignment:
| Q |
221 |
gaagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagcatcaataaccgttgtcctgag |
320 |
Q |
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||||||||| |||||||||||| |||||||| |||||||||| |||||| | || || |||||||||| ||||||||| | ||| ||| ||||||| || |
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| T |
43062081 |
gaagtagagcttcacatagataccataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgagtaccaacaacttttgtcctaag |
43062180 |
T |
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| Q |
321 |
aaaacaccgctcataggatcactgctcttcttaaattggcggaatgaattcatggctgtgatcacatccacatt |
394 |
Q |
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| T |
43062181 |
aaaacgccactcatggggtcactagttttcttgttttggcgaaacgagttcatgtgtgtgatcacatcgacatt |
43062254 |
T |
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