View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_low_1 (Length: 681)
Name: NF6619_low_1
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 978853 - 979233
Alignment:
| Q |
15 |
gagaagaatatagagaaagatgaaatctagaagaaaccaag---gtttatgtagggtaacagacaaaagcacatagaaaaagaaaaggtgaatacgctct |
111 |
Q |
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| T |
978853 |
gagaagaatatagagaaaaatgaaatctagaagaaaccaagaaggtttctgtagggtaacagacaaaagcacagagaaaaagaaaaggtgaatacattat |
978952 |
T |
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| Q |
112 |
gataaagaaatcaataattcttgtagagtacaactgaaagaaagaaacacatataacaacccaggagataaaagattctagcaccagggggacccaaaca |
211 |
Q |
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| T |
978953 |
gataaagaaatcaataattcttgtagagtacaactgaaagaaagagacacatataagaacccaggagataaaagattctagcaccaggtggacccaaaca |
979052 |
T |
|
| Q |
212 |
aaagcaaaggaaaaacctcagaaatcaagaagaggggattaatcttgggtcaaggtgaagaaaaggcaaaaaggaaagccaaagaataaactcaaaggaa |
311 |
Q |
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| T |
979053 |
gaagcaaaggaaaaacctcaaaaatcaagaagagaagattaatcttgggtcaaggtgaagaaaaggcaaaaaggaaagccaaagaataaactcaaaggaa |
979152 |
T |
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| Q |
312 |
cataattcggttggaaattgagatgtaaacagggga-aaaactctgagtattagaacccaagtattaatataaagtgattg |
391 |
Q |
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| T |
979153 |
cctgattcgattggaaattgagatgtaaacaggggataaaactctgagtattagaacccaggtattaatataaagtgattg |
979233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 460 - 665
Target Start/End: Original strand, 979302 - 979506
Alignment:
| Q |
460 |
gtaccaactatccagaatctttctttcaactagattaaggaaggataacaaagtaagataagaggaaagagaggtgtggagagagttcaaggaggcatca |
559 |
Q |
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| T |
979302 |
gtaccaactatccagaatctgtctttcaactagattaaggaaggataacaaagtaagagaagaggaaagag--gtgtggagagagttcaaggaggcatca |
979399 |
T |
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| Q |
560 |
attctgtcaactaaatttgaaaccgtacttttttcttaaattaagtgtaacatctatact-aatttatctagaatacttagcatgtgcgttaaacttagt |
658 |
Q |
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| T |
979400 |
attctgtcaactaaatttgaaaccgtacttttttcttaaattaagtgtaacatctatactaaatttatctagaatatttagcatgcgcaataaacttagt |
979499 |
T |
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| Q |
659 |
acttgat |
665 |
Q |
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| T |
979500 |
atttgat |
979506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 665
Target Start/End: Complemental strand, 6454970 - 6454925
Alignment:
| Q |
620 |
aatttatctagaatacttagcatgtgcgttaaacttagtacttgat |
665 |
Q |
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| T |
6454970 |
aatttatctagaatatttagcatacgcgttaaacttagtacttgat |
6454925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 620 - 665
Target Start/End: Original strand, 8677869 - 8677914
Alignment:
| Q |
620 |
aatttatctagaatacttagcatgtgcgttaaacttagtacttgat |
665 |
Q |
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| T |
8677869 |
aatttatctagaatatttagcatgtgcgttaaacttagtacttgat |
8677914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 623 - 665
Target Start/End: Complemental strand, 9984828 - 9984786
Alignment:
| Q |
623 |
ttatctagaatacttagcatgtgcgttaaacttagtacttgat |
665 |
Q |
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| T |
9984828 |
ttatctataatagttagcatgtgcgttaaacttagtacttgat |
9984786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 659
Target Start/End: Complemental strand, 31131013 - 31130974
Alignment:
| Q |
620 |
aatttatctagaatacttagcatgtgcgttaaacttagta |
659 |
Q |
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| T |
31131013 |
aatttatctagaatatttagcatgtgcgttaaacctagta |
31130974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 659
Target Start/End: Complemental strand, 26075961 - 26075922
Alignment:
| Q |
620 |
aatttatctagaatacttagcatgtgcgttaaacttagta |
659 |
Q |
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| T |
26075961 |
aatttatctagaatatttatcatgtgcgttaaacttagta |
26075922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 620 - 661
Target Start/End: Complemental strand, 19079046 - 19079006
Alignment:
| Q |
620 |
aatttatctagaatacttagcatgtgcgttaaacttagtact |
661 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
19079046 |
aatttatctagaatatttagcatgtgcgtt-aacttagtact |
19079006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 620 - 661
Target Start/End: Complemental strand, 19079290 - 19079250
Alignment:
| Q |
620 |
aatttatctagaatacttagcatgtgcgttaaacttagtact |
661 |
Q |
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| T |
19079290 |
aatttatctagaatatttagcatgtgcgtt-aacttagtact |
19079250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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