View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6619_low_12 (Length: 376)
Name: NF6619_low_12
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 33896896 - 33896531
Alignment:
| Q |
1 |
tcaaatgggttgcttcacatgttggtggaaatggttgtgatgaatggttgaatcaatatgcagattttgagaaagtgttcttaggaggtgatagtgctgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33896896 |
tcaaatgggttgcttcacatgttggtggaaatggttctgatgaatggttgaatcaatatgcagattttgagaaagtgttcttaggaggtgatagtgctgg |
33896797 |
T |
|
| Q |
101 |
tgctaatatttcacactatttgggtattcgggttgggaaggaaaatttagatggtgtgaaacttgaagggagtgtttatatacatccttatttttggggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33896796 |
tgctaatatttcacactatttgggtattcgggttgggaaggaaaatttagatggtgtgaaacttgaagggagtgtttatatacatccttatttttggggt |
33896697 |
T |
|
| Q |
201 |
gtggatctaattggttctgaatcaaatatggctgaatttgtagaaaagattcataatttgtggcgtttttcatgtccaactacgactggatcggatgacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33896696 |
gtggatctaattggttctgaatcaaatatggctgaatttgtagaaaagattcataatttgtggcgtttttcatgtccaactacgactggatcggatgacc |
33896597 |
T |
|
| Q |
301 |
cgttgattaacccagctaatgatccggatttggggaagttgggttgtaagagattgcttgtctgtg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33896596 |
cgttgattaacccagctaatgatccggatttggggaagttgggttgtaagagattgcttgtttgtg |
33896531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 33901955 - 33902313
Alignment:
| Q |
1 |
tcaaatgggttgcttcacatgttggtggaaatggttgtgatgaatggttgaatcaatatgcagattttgagaaagtgttcttaggaggtgatagtgctgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33901955 |
tcaaatgggttgcttcacatgttggtggaaatggttctgatgaatggttgaatcaatatgcagattttgagaaagttttcttaggaggtgatagtgctgg |
33902054 |
T |
|
| Q |
101 |
tgctaatatttcacactatttgggtattcgggttgggaaggaaaatttagatggtgtgaaacttgaagggagtgtttatatacatccttatttttggggt |
200 |
Q |
| |
|
||||||||| ||||| |||| |||||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
33902055 |
ggctaatattgcacaccatttaagtattcgggtcgggaaggaaaatttggatggtgtaaaacttgaagggagtttttatattcatccttatttttggggt |
33902154 |
T |
|
| Q |
201 |
gtggatctaattggttctgaa-tcaaatatggctgaatttgtagaaaagattcataatttgtggcgtttttcatgtccaactacgactggatcggatgac |
299 |
Q |
| |
|
||||||| ||||| || ||| | ||| | ||||||| | | ||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
33902155 |
gtggatcggattggatcagaactgaaaca-agctgaatatattgaaaagattcataatttatggcgttttgcatgtccaactacgaatggatcggatgac |
33902253 |
T |
|
| Q |
300 |
ccgttgattaacccagctaatgatccggatttggggaagttgggttgtaagagattgctt |
359 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33902254 |
ccgttgattaacccggctaatgatccggatttggggaagttgggttgtaagagattgctt |
33902313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University