View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_low_13 (Length: 366)
Name: NF6619_low_13
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 8412009 - 8412300
Alignment:
| Q |
1 |
caaaacagtatcatactctcaatcatgtgcataagaaagaagcaatgaatacattccatgaaaccttgatccttctttcacggattttgtcaaacagttt |
100 |
Q |
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| T |
8412009 |
caaaacagtatcatactctcaatcatgtgcataagaaagaagcaatgaatacattccatgaaaccttgatccttctttcacgctttttgtcaaacagttt |
8412108 |
T |
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| Q |
101 |
ccatagatgtttgaaggcatttccttataagatattcacttctcttctattctccaattgctccttataagataaacaactttcaatgcctttgttcatc |
200 |
Q |
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| T |
8412109 |
ccatagatggttgaaggcatttccttataagatattcacttctcttctattctccaattgctccttataagataaacaactttcaatgcctttgttcatc |
8412208 |
T |
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| Q |
201 |
ttacaatggtctttgaagtaannnnnnnnnnnnnatcacaggcattaaagaagttataaacaaaca--acgtggttaatggtaaatttgaaa |
290 |
Q |
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| T |
8412209 |
ttacaacggtctttgaagtaatttttctttttttatcacaggcattaaagaagttataaacaaacaatacgtgattaatggtaaatttgaaa |
8412300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 8451659 - 8451737
Alignment:
| Q |
1 |
caaaacagtatcata---ctctcaatcatgtgcataagaaagaagcaatgaatacattccatgaaaccttgatccttct |
76 |
Q |
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| T |
8451659 |
caaaacagtatcatagtactctccaacatgtgcataagaaagaagcaatgattacattccatgaaaccttgctccttct |
8451737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 8479833 - 8479763
Alignment:
| Q |
31 |
ataagaaagaagcaatgaatacattccatgaaaccttgatccttctttcacggattttgtcaaacagtttc |
101 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||| | | |||||||||||||||| |
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| T |
8479833 |
ataagaaagaagcaatgattacattccatgaaaccttgctccttctttcgtgcagtttgtcaaacagtttc |
8479763 |
T |
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