View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6619_low_15 (Length: 349)

Name: NF6619_low_15
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6619_low_15
NF6619_low_15
[»] chr1 (5 HSPs)
chr1 (173-330)||(16122477-16122635)
chr1 (14-67)||(16122318-16122371)
chr1 (291-330)||(4973359-4973398)
chr1 (283-329)||(22791357-22791403)
chr1 (288-324)||(17936471-17936507)
[»] chr8 (2 HSPs)
chr8 (277-329)||(24728806-24728858)
chr8 (287-329)||(11789650-11789692)
[»] chr2 (3 HSPs)
chr2 (290-330)||(38221889-38221929)
chr2 (289-325)||(41323719-41323755)
chr2 (284-329)||(26352394-26352439)
[»] scaffold0495 (1 HSPs)
scaffold0495 (278-325)||(5969-6016)
[»] chr6 (1 HSPs)
chr6 (278-325)||(10229251-10229298)
[»] chr5 (2 HSPs)
chr5 (278-329)||(7056899-7056950)
chr5 (286-329)||(8229134-8229177)
[»] chr4 (2 HSPs)
chr4 (278-329)||(40216791-40216842)
chr4 (291-329)||(53586219-53586257)
[»] chr7 (1 HSPs)
chr7 (289-330)||(25311336-25311377)
[»] chr3 (2 HSPs)
chr3 (288-325)||(17064096-17064133)
chr3 (277-334)||(27164298-27164355)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 173 - 330
Target Start/End: Original strand, 16122477 - 16122635
Alignment:
Q  173 ctggagacagtgttgccacgttatgagga-gtgaaacgacacttctgtgtcgcgtttaaggaatggctttggtggtaaggctctaatgtctttgggaata 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16122477 ctggagacagtgttgccacgttatgaggacgtgaaacgacacttctgtgtcgcgtttaaggaatggctttggtggtaaggctctaatgtctttgggaata 16122576  T
Q  272 ctctccctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtatt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16122577 ctctccctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtatt 16122635  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 16122318 - 16122371
Alignment:
Q  14 gaacacgaactgggtctttggccatttttgatgaaatgaaaggaatcgaaaatg 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16122318 gaacacgaactgggtctttggccatttttgatgaaatgaaaggaatcgaaaatg 16122371  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 4973398 - 4973359
Alignment:
Q  291 atactccaaaacggaaacgtacccgtatcagatacgtatt 330  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  4973398 atactccaaaacggagacgtacccgtatcaaatacgtatt 4973359  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 22791403 - 22791357
Alignment:
Q  283 aagtccggatactccaaaacggaaacgtacccgtatcagatacgtat 329  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| ||||    
T  22791403 aagtccggatactccaaaatggagacgtacccgtatcatatatgtat 22791357  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 17936507 - 17936471
Alignment:
Q  288 cggatactccaaaacggaaacgtacccgtatcagata 324  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  17936507 cggatactccaaaatggagacgtacccgtatcagata 17936471  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 24728858 - 24728806
Alignment:
Q  277 cctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtat 329  Q
    ||||| ||| ||||||||||||||||||| |||||| |||||| |||||||||    
T  24728858 cctatgaagcccggatactccaaaacggagacgtactcgtatcggatacgtat 24728806  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 11789692 - 11789650
Alignment:
Q  287 ccggatactccaaaacggaaacgtacccgtatcagatacgtat 329  Q
    ||||||||||||||||||| |||| |||||| |||||||||||    
T  11789692 ccggatactccaaaacggagacgtgcccgtaccagatacgtat 11789650  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 38221929 - 38221889
Alignment:
Q  290 gatactccaaaacggaaacgtacccgtatcagatacgtatt 330  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  38221929 gatactccaaaacggagacgtacccgtatcggatacgtatt 38221889  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 41323719 - 41323755
Alignment:
Q  289 ggatactccaaaacggaaacgtacccgtatcagatac 325  Q
    ||||||||||||||||| |||||||||||||||||||    
T  41323719 ggatactccaaaacggacacgtacccgtatcagatac 41323755  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 26352394 - 26352439
Alignment:
Q  284 agtccggatactccaaaacggaaacgtacccgtatcagatacgtat 329  Q
    |||||| ||||||||||| ||| | |||||||||||||||||||||    
T  26352394 agtccgaatactccaaaatggagatgtacccgtatcagatacgtat 26352439  T

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Target: scaffold0495 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 5969 - 6016
Alignment:
Q  278 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatac 325  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||||||||    
T  5969 ctatgaagtctggatacttcaaaacggagacgtacccgtatcagatac 6016  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 10229251 - 10229298
Alignment:
Q  278 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatac 325  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||||||||    
T  10229251 ctatgaagtctggatacttcaaaacggagacgtacccgtatcagatac 10229298  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 7056899 - 7056950
Alignment:
Q  278 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtat 329  Q
    |||| ||||| ||||||||||||||||| ||||||| |||||||||| ||||    
T  7056899 ctatgaagtctggatactccaaaacggagacgtacctgtatcagataagtat 7056950  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 329
Target Start/End: Original strand, 8229134 - 8229177
Alignment:
Q  286 tccggatactccaaaacggaaacgtacccgtatcagatacgtat 329  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||    
T  8229134 tccggataccccaaaacggagacgtacccgtatcggatacgtat 8229177  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 40216791 - 40216842
Alignment:
Q  278 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtat 329  Q
    |||| |||||||||||||||||||| ||||| |||||||||| |||| ||||    
T  40216791 ctatgaagtccggatactccaaaacagaaacatacccgtatcggatatgtat 40216842  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 53586219 - 53586257
Alignment:
Q  291 atactccaaaacggaaacgtacccgtatcagatacgtat 329  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  53586219 atactccaaaacggtgacgtacccgtatcagatacgtat 53586257  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 25311377 - 25311336
Alignment:
Q  289 ggatactccaaaacggaaacgtacccgtatcagatacgtatt 330  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||    
T  25311377 ggatactccaaaacggagacgtacccgtatcggatacatatt 25311336  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 17064133 - 17064096
Alignment:
Q  288 cggatactccaaaacggaaacgtacccgtatcagatac 325  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  17064133 cggatactccaaaacggagacgtacccgtatcggatac 17064096  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 27164355 - 27164298
Alignment:
Q  277 cctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtatttgat 334  Q
    ||||| ||||| ||||||| |||||  || |||||||||||||||||| |||||||||    
T  27164355 cctatgaagtctggatacttcaaaatagagacgtacccgtatcagatatgtatttgat 27164298  T

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