View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_low_17 (Length: 333)
Name: NF6619_low_17
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 134 - 305
Target Start/End: Complemental strand, 6943408 - 6943236
Alignment:
| Q |
134 |
agcttcttctgtttgctaacctcctggacgtttatggaaaatccaataccttttcatgaatgcctgtaattatcaagaggtaagtttcaatcatttatct |
233 |
Q |
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| T |
6943408 |
agcttcttctgtttgctaacctcccggacgtttatggaaaatccaatacctcttcatgaatgcctgtaattatcatgaggtaagtttcaatcattaatct |
6943309 |
T |
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| Q |
234 |
cttggagacttggctaattgctgcacag-ttttaaaaattcatatggatctttgtatggttgtaatttaatgc |
305 |
Q |
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| T |
6943308 |
cttggagacttagctaattgctgcacagtttttaaaaattgatatggatctttgtatggttgaaacttaatgc |
6943236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 68 - 321
Target Start/End: Original strand, 6787334 - 6787569
Alignment:
| Q |
68 |
attgcagctgaagaacaaagtaactgcaagagcttgtcctctcttaacagccaagttttctaaatcagcttcttctgtttgctaacctcctggacgttta |
167 |
Q |
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| T |
6787334 |
attgcagctgaagaacaaagtaactgcaagagcatgtcctgtcttaacaaccaagttttcaaaatcagcttgttttgtttgctaacctcccggacgttta |
6787433 |
T |
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| Q |
168 |
tggaaaatccaataccttttcatgaatgcctgtaattatcaagaggtaagtttcaatcatttatctctt-ggagacttggctaattgctgcacagtttt- |
265 |
Q |
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| T |
6787434 |
tggaatatccaattccttttcat-------------------gaggtaagtttcaagcattta-ctcttgggagacttagctaatggctgcacagtttta |
6787513 |
T |
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| Q |
266 |
aaaaattcatatggatctttgtatggttgtaatttaatgcgttgaatgtatatttt |
321 |
Q |
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| T |
6787514 |
aaaaattcatatggatctttgtatgggtgaaactcaatgcatttaatgtatatttt |
6787569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 6940212 - 6940139
Alignment:
| Q |
134 |
agcttcttctgtttgctaacctcctggacgtttatggaaaatccaataccttttcatgaatgcctgtaattatc |
207 |
Q |
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| T |
6940212 |
agcttcttctgtttgctaacctcccggacgtttatggaaaatccaataccttttcatgaatgcctgtaattatc |
6940139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 6940143 - 6940066
Alignment:
| Q |
228 |
ttatctcttggagacttggctaattgctgcacagttttaaaaattcatatggatctttgtatggttgtaatttaatgc |
305 |
Q |
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| T |
6940143 |
ttatctcttggagacttagctaattgctgcacagttttaaaaattcatatggatctttgtatggttgaaagttaatgc |
6940066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 6943490 - 6943404
Alignment:
| Q |
16 |
gattctgctggtgagacactcccaatcaattcatcatcagtggcaagaagaaattgcagctgaagaacaaagtaactgcaagagctt |
102 |
Q |
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| T |
6943490 |
gattctgctggtgagaccctctcaaccatttcatcatcagtgtcaaggagagattgcatctcaagaacaaagtaactgcaagagctt |
6943404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 6940292 - 6940208
Alignment:
| Q |
17 |
attctgctggtgagacactcccaatcaattcatcatcagtggcaagaagaaattgcagctgaagaacaaagtaactgcaagagctt |
102 |
Q |
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| T |
6940292 |
attctgctggtgagatcctctcaaccatctcatcatcagtgtcaaggagagattgcatctgaagaac-aagtaactgaaagagctt |
6940208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 6859396 - 6859485
Alignment:
| Q |
45 |
ttcatcatcagtggcaagaagaaattgcagctgaagaaca-aagtaactgcaagagcttgtcctctcttaacagccaagttttctaaatc |
133 |
Q |
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| T |
6859396 |
ttcatcatcagtagcaaggagagaatgcagctgaagaacagaagaaattgcaacagcatctcctgtcttgacaggcaagttttcaaaatc |
6859485 |
T |
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