View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_low_21 (Length: 319)
Name: NF6619_low_21
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 298
Target Start/End: Complemental strand, 37564697 - 37564406
Alignment:
| Q |
6 |
gtgagatgaaatatgtaaataaaccaaaaataaagacaaatgttacattacattacataatcttgaaaagccaaaaataaagactttattcttttaattg |
105 |
Q |
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| T |
37564697 |
gtgaaatgaaatatgtaaataaaccaaaaataaagacaaatgttacat-acattacataatcttgaaaagccaaaaataaagactttattcttttaattg |
37564599 |
T |
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| Q |
106 |
aaaaagggccaattggacagacaaaagttgttggcttctgttgattggttcctgaaatgggaccaaactcgtttgtttttattcctggcaatgattagag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37564598 |
aaaaagggccaattggacagacaaaagttgttggcttctgttgattggttcctgaaatgggaccaaactcgtttgtttttattcctggcaatgattagag |
37564499 |
T |
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| Q |
206 |
ggtgatgcaccaaaatggaagccaaaatagnnnnnnnnnnnnnnnngaaggctatgcatgtggtagttttcatcacttttctatcacctggcc |
298 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37564498 |
ggtgatgcaccaaaatggaagccaaaatagaaaaaagaaaaaaaaagaaggctatgcatgtggtagttttcatcacttttctatcacctggcc |
37564406 |
T |
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