View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_low_22 (Length: 315)
Name: NF6619_low_22
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 46817467 - 46817171
Alignment:
| Q |
15 |
aattagacatggcaaattatgttgctttatgtcacctagctataatattggtcattaatattgtcatggctggaccagccaatgcacaaatcaacacccc |
114 |
Q |
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| T |
46817467 |
aattagacatggcaaattctgttgctttatgtcacctagctataatattggtcattaatattgtcatggctggaccagccaatgcacaaatcaacacccc |
46817368 |
T |
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| Q |
115 |
atgtaatccttctacaataagcactctcttcacaccttgtatgggttttcttacaggtagtagtgctaatggcacctcaccaaccactgaatgttgtggt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46817367 |
atgtaatccttctacaataagcactctcttcacaccttgtatgggttttcttacaggtagtagtgctaatggcacctcaccaaccactgaatgttgtggt |
46817268 |
T |
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| Q |
215 |
gctcttaagtccctaacaagtagtggcatgaattgtttgtgtctccttgtaactgcaagtgttcccttcaaaattccaatcaatagaacctttgcta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46817267 |
gctcttaagtccctaacaagtagtggcatgaattgtttgtgtctccttgtaactgcaagtgttcccttcaaaattccaatcaatagaaccttggcta |
46817171 |
T |
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