View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6619_low_29 (Length: 253)
Name: NF6619_low_29
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 23915138 - 23914894
Alignment:
| Q |
1 |
tattggtgtcgatgtagtgcccgtgtgtctggcatcaatgtctttgtttgtgcttcattccatcaacccaaaatctatttcaattgaagccattgttcct |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23915138 |
tattggtgtcgatgtagtgcctgtgtgtctggcgtcaatgtctttgtttgtgcttcattccatcaacccaaaatctatttcaattgaagccattgttcct |
23915039 |
T |
|
| Q |
101 |
agcttttcacggtgattgcagattgattattgtaagctgtaatatattgtttgttgagacaattattgttggataacagttacacaccactattcctttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23915038 |
agcttttcacggtgattgcagattgattattgtaagctgtaatatattgtttgttgagacaattattgttggatagcagttacacaccactattcctttg |
23914939 |
T |
|
| Q |
201 |
ttgttcttcataagtgtcatcaataacttctaccatttctgtgct |
245 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23914938 |
ttgttcttcataagtgtcatcaatagcttctaccatttctgtgct |
23914894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University