View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6619_low_32 (Length: 246)

Name: NF6619_low_32
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6619_low_32
NF6619_low_32
[»] chr7 (3 HSPs)
chr7 (23-228)||(21601353-21601569)
chr7 (19-137)||(21604991-21605112)
chr7 (52-145)||(12421454-12421547)
[»] chr3 (16 HSPs)
chr3 (17-137)||(19612254-19612377)
chr3 (19-125)||(19563513-19563622)
chr3 (21-125)||(19549263-19549370)
chr3 (19-86)||(19539137-19539207)
chr3 (19-86)||(18479248-18479318)
chr3 (19-125)||(19581424-19581533)
chr3 (19-125)||(19626154-19626262)
chr3 (28-125)||(19603742-19603842)
chr3 (31-195)||(19653548-19653723)
chr3 (52-113)||(19593581-19593642)
chr3 (52-125)||(19617292-19617365)
chr3 (28-112)||(19557274-19557361)
chr3 (53-125)||(19609633-19609705)
chr3 (147-195)||(19617211-19617259)
chr3 (19-125)||(32150910-32151020)
chr3 (52-86)||(19646693-19646727)
[»] chr6 (1 HSPs)
chr6 (19-125)||(18025207-18025316)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 23 - 228
Target Start/End: Complemental strand, 21601569 - 21601353
Alignment:
Q  23 aatagaacttaaggttcaaagttcagatgcttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtattttgcca 122  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  21601569 aatagaacttaaggttcaaagttcagatgcttacccgaagccagaaccaacgcaatgcataaaagtcccaagagaaaatattgagaaatatattttgcca 21601470  T
Q  123 tttcatgtgaagattgcatct--------tactatcttttgtttttgca--atattcatagcaaacttc-aagtccattatatatagtactcgtgatata 211  Q
    |||| ||||||||||| ||||        || |||||||||||||||||  |||| ||||||||||||| ||||||||||||||||||| || |||||||    
T  21601469 tttcttgtgaagattgtatcttaaagctctattatcttttgtttttgcaatatatgcatagcaaacttcaaagtccattatatatagtaatcatgatata 21601370  T
Q  212 tgattccgcccatattt 228  Q
    |||||  ||||||||||    
T  21601369 tgattatgcccatattt 21601353  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 21605112 - 21604991
Alignment:
Q  19 aagaaatagaacttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtat 115  Q
    |||||||||||||||||||||||| || | |||   ||||||||||||  |||||||||||||||| |||||| |||| ||||||||||| |||||||      
T  21605112 aagaaatagaacttaaggttcaaaattaatatgtttcttacctgaagcttgaaccaacgcaatgcacaaaagtcccaagagaaaatattgggaaatgtgg 21605013  T
Q  116 tttgccatttcatgtgaagatt 137  Q
    ||||||||||  ||||||||||    
T  21605012 tttgccattttttgtgaagatt 21604991  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 12421454 - 12421547
Alignment:
Q  52 cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtattttgccatttcatgtgaagattgcatctta 145  Q
    |||||| |||||||| || |||||||||||||||||| | ||||||||| || |  ||| || | |||||||||  |||||||||| |||||||    
T  12421454 cttacccgaagccaggacaaacgcaatgcataaaagtccgaaaagaaaagatcggaaaaagtgtgttgccattttttgtgaagatttcatctta 12421547  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 19612377 - 19612254
Alignment:
Q  17 agaagaaatagaacttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgt 113  Q
    |||||||||| ||||||| ||| |||||| | |||   |||||||||||| ||||||||||||||||| |||| | |||||||| ||||||| |||||||    
T  19612377 agaagaaatataacttaatgttgaaagtttatatgtttcttacctgaagctagaaccaacgcaatgcagaaaattcccaaaagacaatattgggaaatgt 19612278  T
Q  114 attttgccatttcatgtgaagatt 137  Q
     |||||||||||  ||||||||||    
T  19612277 gttttgccattttttgtgaagatt 19612254  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 19563622 - 19563513
Alignment:
Q  19 aagaaatagaacttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtat 115  Q
    ||||||||||||||||||||||||||||| |||   |||||||||||| |||| |||| |||||||||||| | |||| ||| | ||||| ||||||| |    
T  19563622 aagaaatagaacttaaggttcaaagttcatatgtttcttacctgaagctagaatcaacacaatgcataaaattcccaagagacagtattgggaaatgtgt 19563523  T
Q  116 tttgccattt 125  Q
    ||||||||||    
T  19563522 tttgccattt 19563513  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 19549370 - 19549263
Alignment:
Q  21 gaaatagaacttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtattt 117  Q
    ||||||||||||||||||||||||||  |||   |||||||||||  |||||||||||||||||||||| | |||| ||| | || |||||||||| |||    
T  19549370 gaaatagaacttaaggttcaaagttcgtatgtttcttacctgaagttagaaccaacgcaatgcataaaattcccaagagacagtactgagaaatgtgttt 19549271  T
Q  118 tgccattt 125  Q
    ||||||||    
T  19549270 tgccattt 19549263  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 19539207 - 19539137
Alignment:
Q  19 aagaaatagaacttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaa 86  Q
    ||||||||||||||||||||||||||||| |||   |||||||||||| ||||||||||||||||||||||    
T  19539207 aagaaatagaacttaaggttcaaagttcatatgtttcttacctgaagctagaaccaacgcaatgcataaaa 19539137  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 18479248 - 18479318
Alignment:
Q  19 aagaaatagaacttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaa 86  Q
    |||||||||||||||||||| |||||||| |||   |||||||||||| ||||||||||||||||||||||    
T  18479248 aagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagctagaaccaacgcaatgcataaaa 18479318  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 19581533 - 19581424
Alignment:
Q  19 aagaaatagaacttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtat 115  Q
    |||||||||||||||||||| |||||||| |||   |||||||||||  |||||||| |||||| |||||| | |||| ||||| || || ||||||| |    
T  19581533 aagaaatagaacttaaggttgaaagttcatatgtttcttacctgaagttagaaccaatgcaatgaataaaattcccaagagaaagtactgggaaatgtgt 19581434  T
Q  116 tttgccattt 125  Q
    ||||||||||    
T  19581433 tttgccattt 19581424  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 19626262 - 19626154
Alignment:
Q  19 aagaaatagaacttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtat 115  Q
    |||||||||||||||||||| ||| |||| |||   |||||||||||  |||||||||||||||||||||| | |||| ||| | || |||||||||| |    
T  19626262 aagaaatagaacttaaggtttaaa-ttcatatgtttcttacctgaagttagaaccaacgcaatgcataaaattgccaatagacagtaatgagaaatgtgt 19626164  T
Q  116 tttgccattt 125  Q
    ||||||||||    
T  19626163 tttgccattt 19626154  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 19603842 - 19603742
Alignment:
Q  28 aacttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtattttgccatt 124  Q
    ||||| |||||||||||||| |||   ||||||  |||| ||||||||| |||||||||||| | |||| ||||||||||| ||||||| ||||||||||    
T  19603842 aacttgaggttcaaagttcatatgtttcttacccaaagctagaaccaacacaatgcataaaattcccaagagaaaatattgcgaaatgtgttttgccatt 19603743  T
Q  125 t 125  Q
    |    
T  19603742 t 19603742  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 195
Target Start/End: Complemental strand, 19653723 - 19653548
Alignment:
Q  31 ttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtattttgccatttca 127  Q
    ||||||||||||||||| |||   ||||||| |||  |||||||||||||||||||||| | |||| ||| | || || ||||||| |||||||||||      
T  19653723 ttaaggttcaaagttcatatgtttcttacctaaagttagaaccaacgcaatgcataaaattgccaagagacagtactgggaaatgtgttttgccattttt 19653624  T
Q  128 tgtgaagattgcatct--------tactatcttttgtttttgcaatattcatagcaaacttcaagtccattatata 195  Q
    | ||||||||  ||||        || ||||||||||||| ||||||| ||||| ||||| ||||| |||||||||    
T  19653623 tatgaagattttatcttatagctctattatcttttgttttcgcaatatgcatagaaaactccaagttcattatata 19653548  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 19593642 - 19593581
Alignment:
Q  52 cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgt 113  Q
    |||||||||||| |||||||||||||||||||||| | | || ||||||||||| |||||||    
T  19593642 cttacctgaagctagaaccaacgcaatgcataaaattcctaagagaaaatattgggaaatgt 19593581  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 19617365 - 19617292
Alignment:
Q  52 cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtattttgccattt 125  Q
    |||||| ||||| |||||||||||||||||||||| | | || |||||||||||  |||| |||||||||||||    
T  19617365 cttacccgaagctagaaccaacgcaatgcataaaactccaaagagaaaatattggaaaatatattttgccattt 19617292  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 19557361 - 19557274
Alignment:
Q  28 aacttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatg 112  Q
    ||||||||||| |||||||| |||   |||||||||||| |||||||| |||||| |||||| | |||| ||| ||||||| ||||||    
T  19557361 aacttaaggttgaaagttcatatgtttcttacctgaagctagaaccaaggcaatgtataaaattcccaagagacaatattgggaaatg 19557274  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 19609705 - 19609633
Alignment:
Q  53 ttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtattttgccattt 125  Q
    |||||| |||| ||||||||| |||||||||||| | |||| ||| |||| || ||||||| |||||||||||    
T  19609705 ttacctaaagctagaaccaacacaatgcataaaattcccaagagacaatactgggaaatgtgttttgccattt 19609633  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 19617259 - 19617211
Alignment:
Q  147 tatcttttgtttttgcaatattcatagcaaacttcaagtccattatata 195  Q
    |||| |||||||| ||||||| ||||||||||||||||| |||||||||    
T  19617259 tatcgtttgttttcgcaatatgcatagcaaacttcaagttcattatata 19617211  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 32150910 - 32151020
Alignment:
Q  19 aagaaatagaacttaaggttcaaagttcagatg---cttacctgaag-ccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgta 114  Q
    ||||||||||||||||||||||||||||| |||   ||||  |||||   |||||||||||||||||||||| | |||| ||| | || |  |||||||     
T  32150910 aagaaatagaacttaaggttcaaagttcatatgtttcttaattgaagttaagaaccaacgcaatgcataaaattgccaagagacagtactcggaaatgtg 32151009  T
Q  115 ttttgccattt 125  Q
    |||||||||||    
T  32151010 ttttgccattt 32151020  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 19646727 - 19646693
Alignment:
Q  52 cttacctgaagccagaaccaacgcaatgcataaaa 86  Q
    |||||||||||| ||||||||||||||||||||||    
T  19646727 cttacctgaagctagaaccaacgcaatgcataaaa 19646693  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 18025316 - 18025207
Alignment:
Q  19 aagaaatagaacttaaggttcaaagttcagatg---cttacctgaagccagaaccaacgcaatgcataaaagttccaaaagaaaatattgagaaatgtat 115  Q
    |||||||||||| ||||||| |||||||| |||   ||||||||| || |||||||||||||||||||||| | |||| ||| ||||||||||||| | |    
T  18025316 aagaaatagaacctaaggttgaaagttcatatgtttcttacctgaggctagaaccaacgcaatgcataaaattgccaacagacaatattgagaaatatgt 18025217  T
Q  116 tttgccattt 125  Q
    ||||||||||    
T  18025216 tttgccattt 18025207  T

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