View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6619_low_4 (Length: 465)
Name: NF6619_low_4
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 31 - 447
Target Start/End: Original strand, 13653149 - 13653565
Alignment:
| Q |
31 |
aagaacttaaggaaaggactactaaggagagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgac |
130 |
Q |
| |
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|||||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13653149 |
aagaacttgaggaagggactagtaaggagaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataaggcaattggtgcttttttgac |
13653248 |
T |
|
| Q |
131 |
acatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatatgttggccttatttttctgatcaaccgcttaatagtaggtttgtg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13653249 |
acatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatttgttggccttatttttctgatcaaccgcttaatagtaggtttgtg |
13653348 |
T |
|
| Q |
231 |
agtgaggtttggaagcttggattggatatgaaagatgtttgtgataggaatgttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13653349 |
agtgaggtttggaagcttggattggatatgaaagatgtttgtgataggaatgttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagt |
13653448 |
T |
|
| Q |
331 |
tttcaaaatctgctactaaaatggcggatttggcttccaagagtgtaaatcctgatggttcctcctacaacaacctccaagatttgattcactatataag |
430 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13653449 |
tttcaaaatctgctactaaaatggcggatttggcttccaagagtgtaaatcctgatggttcctcctacaacaacctccaagatttgattcagtatataag |
13653548 |
T |
|
| Q |
431 |
gtctactagcccataaa |
447 |
Q |
| |
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||||||||||||||||| |
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| T |
13653549 |
gtctactagcccataaa |
13653565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 40 - 446
Target Start/End: Original strand, 13658631 - 13659037
Alignment:
| Q |
40 |
aggaaaggactactaaggagagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtgg |
139 |
Q |
| |
|
||||| |||||||||| |||| ||| ||||||||| ||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
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|
| T |
13658631 |
aggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgcctttttgacacatagtgg |
13658730 |
T |
|
| Q |
140 |
atggaattctactttggagagtgtggtttgtggtgtgcctatgatatgttggccttatttttctgatcaaccgcttaatagtaggtttgtgagtgaggtt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| |
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|
| T |
13658731 |
atggaattctactttggagagtgtggtttgtggtgtgcctatgatatgttggccttattttgctgatcaacaaattaatagtaggtttgtgagtgatgtt |
13658830 |
T |
|
| Q |
240 |
tggaagcttggattggatatgaaagatgtttgtgataggaatgttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagttttcaaaat |
339 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||||||||||||| | || |
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|
| T |
13658831 |
tggaaacttgggttggatatgaaagatgtttgtgataggaaggttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagat |
13658930 |
T |
|
| Q |
340 |
ctgctactaaaatggcggatttggcttccaagagtgtaaatcctgatggttcctcctacaacaacctccaagatttgattcactatataaggtctactag |
439 |
Q |
| |
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| || | | || || | ||||| ||||||||||| | ||||| ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |
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|
| T |
13658931 |
cagcaatggatatagctaagttggcatccaagagtgtgagtcctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctactag |
13659030 |
T |
|
| Q |
440 |
cccataa |
446 |
Q |
| |
|
||||||| |
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|
| T |
13659031 |
cccataa |
13659037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 40 - 447
Target Start/End: Original strand, 13648103 - 13648510
Alignment:
| Q |
40 |
aggaaaggactactaaggagagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtgg |
139 |
Q |
| |
|
||||| ||||| |||||| | |||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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|
| T |
13648103 |
aggaagggactcgtaaggaaaaaggtttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacataatgg |
13648202 |
T |
|
| Q |
140 |
atggaattctactttggagagtgtggtttgtggtgtgcctatgatatgttggccttatttttctgatcaaccgcttaatagtaggtttgtgagtgaggtt |
239 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| |
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|
| T |
13648203 |
gtggaattcaactttggaaagtgtggtttgtggtgtgcctatgatatgttggccttattttgctgatcaacaaattaatagtaggtttgtgagtgatgtt |
13648302 |
T |
|
| Q |
240 |
tggaagcttggattggatatgaaagatgtttgtgataggaatgttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagttttcaaaat |
339 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||||||||||||| | || |
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|
| T |
13648303 |
tggaaacttgggttggatatgaaagatgtttgtgataggaaggttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagat |
13648402 |
T |
|
| Q |
340 |
ctgctactaaaatggcggatttggcttccaagagtgtaaatcctgatggttcctcctacaacaacctccaagatttgattcactatataaggtctactag |
439 |
Q |
| |
|
| || | | || || | ||||| ||||||||||| | ||||| ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |
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|
| T |
13648403 |
cagcaatggatatagctaagttggcatccaagagtgtgagtcctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctactag |
13648502 |
T |
|
| Q |
440 |
cccataaa |
447 |
Q |
| |
|
||| |||| |
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|
| T |
13648503 |
cccgtaaa |
13648510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 26672242 - 26672115
Alignment:
| Q |
83 |
tccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatg |
182 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| | ||||||||||||| ||| |||||||| || ||||| ||||| | ||||||| || ||| |
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|
| T |
26672242 |
tccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgtttgtggtggtgttccaatg |
26672143 |
T |
|
| Q |
183 |
atatgttggccttatttttctgatcaac |
210 |
Q |
| |
|
||||||||||||| |||| |||| |||| |
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|
| T |
26672142 |
atatgttggcctttttttgctgaacaac |
26672115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 26943840 - 26943713
Alignment:
| Q |
83 |
tccacaagaggaagttttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatg |
182 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| | ||||||||||||| ||| |||||||| || ||||| ||||| | ||||||| || ||| |
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|
| T |
26943840 |
tccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgtttgtggtggtgttccaatg |
26943741 |
T |
|
| Q |
183 |
atatgttggccttatttttctgatcaac |
210 |
Q |
| |
|
||||||||||||| |||| |||| |||| |
|
|
| T |
26943740 |
atatgttggcctttttttgctgaacaac |
26943713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 26901488 - 26901401
Alignment:
| Q |
123 |
tttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatatgttggccttatttttctgatcaac |
210 |
Q |
| |
|
||||||||||||||||| |||||||| || || || ||||| | ||||||| || |||||||||||||||| |||| |||| |||| |
|
|
| T |
26901488 |
tttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtggtgttccaatgatatgttggcctttttttgctgaacaac |
26901401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 20156911 - 20156862
Alignment:
| Q |
99 |
ttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattc |
148 |
Q |
| |
|
||||||||| | ||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
20156911 |
ttgtcacataaagcaataggtgcatttttgacacattgtggatggaattc |
20156862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 894534 - 894462
Alignment:
| Q |
112 |
caattggtgcttttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgat |
184 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||| ||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
894534 |
caattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctatgat |
894462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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