View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6619_low_5 (Length: 456)
Name: NF6619_low_5
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_low_5 |
 | |
|
| [»] scaffold1063 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1063 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 183 - 427
Target Start/End: Complemental strand, 3102 - 2855
Alignment:
| Q |
183 |
atggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatcgtagcaacattttggttcataggctttctttaaagtgtaa |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
3102 |
atggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatggtagcagcattttggttcataggctttctttaaagtataa |
3003 |
T |
|
| Q |
283 |
ccagaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacat-aagcttttgcatgtattttataca--acaaa |
379 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
3002 |
ctcgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcccataaagcttttgcatgtattttacacaacacaaa |
2903 |
T |
|
| Q |
380 |
aaatagagcatttataaatggaaaaatttatataataaagatgtagtc |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2902 |
aaatagagcatttataaatggaaaaatttatataataaagatgtagtc |
2855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 6939631 - 6939870
Alignment:
| Q |
14 |
taccctctttgaactttgaatgttt--ctttatcatcatctactgatctttcctccgattcttatcactttgagaacttaggcaagtgttcaatttgttc |
111 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
6939631 |
taccctctttgaactttgaatttttttctttatcatcatctactcatatttcctccaattcttatcactttgagaactaaggcaggtgttcaatttgttc |
6939730 |
T |
|
| Q |
112 |
ttttttcatcagtctttaattcagcgagagatttgaaattgaaaccatattgtcgacgacttgaagcaaacatggcatctttccataagcatcacagtat |
211 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
6939731 |
ttttttcatcagtcttcaattcagcgagagatttgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacggtat |
6939830 |
T |
|
| Q |
212 |
cctattgcttcatccaaacctacaacatatcgtagcaaca |
251 |
Q |
| |
|
|| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
6939831 |
ccgtatgcttcatccaaacctacaatatatggtagcaaca |
6939870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 6942806 - 6943045
Alignment:
| Q |
14 |
taccctctttgaactttgaatgttt--ctttatcatcatctactgatctttcctccgattcttatcactttgagaacttaggcaagtgttcaatttgttc |
111 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
6942806 |
taccctctttgaactttgaatttttttctttatcatcatctactcatctttcctccaattcttatcactttgagaactaaggcaggtgtaaaatttgttc |
6942905 |
T |
|
| Q |
112 |
ttttttcatcagtctttaattcagcgagagatttgaaattgaaaccatattgtcgacgacttgaagcaaacatggcatctttccataagcatcacagtat |
211 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6942906 |
ttttttcatcagtcttcaattcagcgagagatttgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacagtat |
6943005 |
T |
|
| Q |
212 |
cctattgcttcatccaaacctacaacatatcgtagcaaca |
251 |
Q |
| |
|
|| ||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
6943006 |
ccgtatgcttcatccaaagctacaatatatggtagcaaca |
6943045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 262 - 405
Target Start/End: Original strand, 6943078 - 6943221
Alignment:
| Q |
262 |
taggctttctttaaagtgtaaccagaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacataagcttttgca |
361 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
6943078 |
taggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaaacatgcacataagcttttgta |
6943177 |
T |
|
| Q |
362 |
tgtattttatacaacaaaaaatagagcatttataaatggaaaaa |
405 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
6943178 |
tgtattttacacaataaaaaatagagaatttataaatggaaaaa |
6943221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 262 - 402
Target Start/End: Original strand, 6939903 - 6940046
Alignment:
| Q |
262 |
taggctttctttaaagtgtaaccagaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacataagc---tttt |
358 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||| |
|
|
| T |
6939903 |
taggctttctttgaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaagacatgcacatatgcttttttt |
6940002 |
T |
|
| Q |
359 |
gcatgtattttatacaacaaaaaatagagcatttataaatggaa |
402 |
Q |
| |
|
| |||||||||| |||| ||||||||||||||||| |||||||| |
|
|
| T |
6940003 |
gtatgtattttacacaagaaaaaatagagcatttacaaatggaa |
6940046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 6787849 - 6787696
Alignment:
| Q |
59 |
ctttcctccgattcttatcactttgagaacttaggcaagtgttcaatttgttcttttttcatcagtctttaattcagcgagagatttgaaattgaaacca |
158 |
Q |
| |
|
||||||| | |||||||||| |||| |||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
6787849 |
ctttccttcaattcttatcagtttgggaacataggcaagtgttcaatttgttctcgcttaatcagtcttcaattcagcgagagatttgcaattgaaacca |
6787750 |
T |
|
| Q |
159 |
tattgtcgacgacttgaagc--aaacatggcatctttccataagcatcacagta |
210 |
Q |
| |
|
|||||||||| |||| || | ||| |||||||| ||||||||||||||||||| |
|
|
| T |
6787749 |
tattgtcgacaacttcaaacagaaaaatggcatccttccataagcatcacagta |
6787696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 286 - 384
Target Start/End: Complemental strand, 6787691 - 6787593
Alignment:
| Q |
286 |
gaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacataagcttttgcatgtattttatacaacaaaaaata |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
6787691 |
gaaggatttttcaagtaattatctcatcagcggatgtattcatgaattgataaaaacatgtccataagattttgcatgtattttacacaataaaaaata |
6787593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 6787594 - 6787549
Alignment:
| Q |
408 |
tatataataaagatgtagtccaatcaaaatatacattcaacgcatt |
453 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| || ||||| |
|
|
| T |
6787594 |
tatataataaaggtatagtccaatcaaaatatacattaaatgcatt |
6787549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University