View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6619_low_7 (Length: 437)
Name: NF6619_low_7
Description: NF6619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6619_low_7 |
 | |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Original strand, 6325526 - 6325938
Alignment:
| Q |
7 |
ataggatattacaaatctcaaatgaacattttacatcatatagtacaacagcatgacaaaaaatagaaactcatacaacaaaatgaaaatacaacacact |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6325526 |
ataggatattacaaatttcaaatgaacattttacatcata--gtacaacagcatgacaaaaaatagaaactcatacaacaaaatgaaaatacaacacact |
6325623 |
T |
|
| Q |
107 |
aaaattaatttctctagataggaagcgacctaactgcaggtaactcggaaataccactctcaattttaccctcaaaaactttcttgatcctttctggaat |
206 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
6325624 |
gaaattaatttctttatataggaagcgacctaactacaggtaactcggaaataccactctcagttttaccctcaaaaactttcttgatcctttctggaat |
6325723 |
T |
|
| Q |
207 |
ccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325724 |
ccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccatt |
6325823 |
T |
|
| Q |
307 |
aaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagcaccaaag |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| ||| | || ||| ||||||||||||| |
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|
| T |
6325824 |
aaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaatctcttgatgtgaatatgtatcattgttacaagcaccaaag |
6325923 |
T |
|
| Q |
407 |
ccaggtagtaaagag |
421 |
Q |
| |
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||||||||||||||| |
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| T |
6325924 |
ccaggtagtaaagag |
6325938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 421
Target Start/End: Original strand, 6333011 - 6333415
Alignment:
| Q |
6 |
cataggatattacaaatctcaaatgaacattttacat--catat---agtacaacagcatgacaaaaaatagaaactcatacaacaaaatgaaaatacaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||| ||||||||||||||||||| |
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| T |
6333011 |
cataggatattacaaatctcaaatgaacattttacatatcatagtacagtacaacaacatgataaaaaatagaatctcatacaacaaaatgaaa------ |
6333104 |
T |
|
| Q |
101 |
cacactaaaattaatttctctagataggaagcgacctaactgcaggtaactcggaaataccactctcaattttaccctcaaaaactttcttgatcctttc |
200 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| | | | ||||||||| ||||||||||||||||| |
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| T |
6333105 |
----------ttaatttctctagataggaatcgacctaactgcaggtaactccgaatcgccactctgagtctgaccctcaaacactttcttgatcctttc |
6333194 |
T |
|
| Q |
201 |
tggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaata |
300 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||||||| || ||||| |
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|
| T |
6333195 |
tggaatcaattgatagatttcatttttactcttatagcacatcaaagcaaagatgaagatcaacaaacccaaataaatccaagcaattgtaggagaaatt |
6333294 |
T |
|
| Q |
301 |
accattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattgatgtgaaaatgcaacaatgtcacaagca |
400 |
Q |
| |
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| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
6333295 |
atcatcaaagctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaactcttgatgtgaaaatgcaacaatgtcacaagca |
6333394 |
T |
|
| Q |
401 |
ccaaagccaggtagtaaagag |
421 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
6333395 |
ccaaagccaggtagtaaagag |
6333415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 187 - 420
Target Start/End: Complemental strand, 6242966 - 6242743
Alignment:
| Q |
187 |
ttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaa |
286 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| ||| | |||||||| |||||||||||||||| |||||||| ||||||||||||||||| |||| |
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|
| T |
6242966 |
ttcttgatcctttttggaatccattgaaagagttcttttcgattcttatagaacatcaaagcaaagattaagatccacaaacccaaataaatccaagcaa |
6242867 |
T |
|
| Q |
287 |
ttgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattgatgtgaaaatgcaa |
386 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||| || | |||||||||||||||||||||| || || |
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|
| T |
6242866 |
ttgtcggcgaaat----------gctaaaattgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaa |
6242777 |
T |
|
| Q |
387 |
caatgtcacaagcaccaaagccaggtagtaaaga |
420 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||| |
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|
| T |
6242776 |
cattgtcacaagcaccaaagctaggtagtaaaga |
6242743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 174 - 421
Target Start/End: Original strand, 6346285 - 6346532
Alignment:
| Q |
174 |
accctcaaaaactttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaa |
273 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| |||||||||||| |||||| ||| |||||||||||||||||||| |||||||| || |||||| |
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|
| T |
6346285 |
accctcaaaaacattcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatccacaagcccaaa |
6346384 |
T |
|
| Q |
274 |
taaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattga |
373 |
Q |
| |
|
||||||| |||||||| || ||||| | ||| ||||||| || ||||||||||||||||||||||| ||| | |||| || | |||||||| | |||| |
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|
| T |
6346385 |
aaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagttcttga |
6346484 |
T |
|
| Q |
374 |
tgtgaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagag |
421 |
Q |
| |
|
|||||| || | || |||||||||||||||| ||| ||||||||||| |
|
|
| T |
6346485 |
tgtgaagctgtagcattgtcacaagcaccaaaaccaagtagtaaagag |
6346532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 174 - 405
Target Start/End: Complemental strand, 6219828 - 6219594
Alignment:
| Q |
174 |
accctcaaaaactttcttgatcctttctggaatccat---tgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaaccc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||| || ||| | ||| |||||||||||||| ||||| |||||||| || | | |
|
|
| T |
6219828 |
accctcaaaaactttcttgatcctttctggaatcaatatttgatagagctcttttcgattctcatagcacatcaaagaaaagagtaagatccacaagcac |
6219729 |
T |
|
| Q |
271 |
aaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactat |
370 |
Q |
| |
|
||| ||||||| |||||||| || ||||| | ||| ||||||| || ||||||||||||||||||||||| ||| | |||| || | |||||||| || | |
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|
| T |
6219728 |
aaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctct |
6219629 |
T |
|
| Q |
371 |
tgatgtgaaaatgcaacaatgtcacaagcaccaaa |
405 |
Q |
| |
|
||||||||| || |||| ||| | |||||||||| |
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|
| T |
6219628 |
tgatgtgaatctgtaacattgtaataagcaccaaa |
6219594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 6220007 - 6219929
Alignment:
| Q |
7 |
ataggatattacaaatctcaaatgaacattttacatcatatagtacaacagcatgac-aaaaaatagaaactcatacaacaaaa |
89 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||| | |||| ||||||||||||||||| |||||||| |
|
|
| T |
6220007 |
ataggatattacaaatttcaaatgaacattttacatcatat-----aacaacttgacaaaaaaatagaaactcattcaacaaaa |
6219929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 334
Target Start/End: Complemental strand, 6219298 - 6219151
Alignment:
| Q |
187 |
ttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaa |
286 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| ||| | | ||||||| |||||||| ||| || |||||| | | || |||| |||||| |||| |
|
|
| T |
6219298 |
ttcttgatcctttggggaatcatttgatagagttcttttcgatttttatagcccatcaaagaaaatattaagatcaacagcccgaaatcaatccaagcaa |
6219199 |
T |
|
| Q |
287 |
ttgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaa |
334 |
Q |
| |
|
| || || |||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
6219198 |
tggtaggggaaatattcatcaaagctaaaataaaaacaacacttccaa |
6219151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 265 - 379
Target Start/End: Complemental strand, 1106 - 992
Alignment:
| Q |
265 |
aaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaagga |
364 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||| || | || |||| |
|
|
| T |
1106 |
aaacccaaataaatccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggagga |
1007 |
T |
|
| Q |
365 |
aactattgatgtgaa |
379 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1006 |
aactattgatgtgaa |
992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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