View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6620_high_2 (Length: 305)
Name: NF6620_high_2
Description: NF6620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6620_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 5 - 291
Target Start/End: Original strand, 17528279 - 17528569
Alignment:
| Q |
5 |
tatgaaacaaaaacccgaacatataaaaaatttactgcataatgcataagaagcatgacatgtaagaaaatgttattcatttccctcatatatatactta |
104 |
Q |
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| T |
17528279 |
tatgaaacaaaaacctgaacaaataaaaagtttactgcagaatgcataagaagcatgaaatgtaagaaaatgttattca-ttccctc--atatatactta |
17528375 |
T |
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| Q |
105 |
actctacagatcttccacatgataagcaatg------tctcaacagttcaggaacaactttcaacaaatcaattcctatgcatcacaaacattgtaagga |
198 |
Q |
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|||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
17528376 |
actcgacagatcttccacacgataagcaatgtctcaatctcaacagttcgggaacaactttcaacaaatcaattcctatgcatcatagacattataagga |
17528475 |
T |
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| Q |
199 |
attaattttcaaaatacggttaacattgactaaaataagttaggaggac-nnnnnnnctggaccattctttctagccaaggcaataccagtgaa |
291 |
Q |
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| T |
17528476 |
attaactttcaaaatacggttaacgttgaccaaaataagttaggaggacaaaaaaaactagaccattctttctagccaaggcaatgctagtgaa |
17528569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 17658294 - 17658004
Alignment:
| Q |
5 |
tatgaaacaaaaacccgaacatataaaaaatttactgcataatgcataagaagcatgacatgtaagaaaatgttattcatttccctcatatatatactta |
104 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||| |
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| T |
17658294 |
tatgaaacaaaaacctgaacaaataaaaagtttactgcagaatgcattagaagcatgatatgtaagaaaatgttattca-ttccctc--atatatactta |
17658198 |
T |
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| Q |
105 |
actctacagatcttccacatgataagcaatg------tctcaacagttcaggaacaactttcaacaaatcaattcctatgcatcacaaacattgtaagga |
198 |
Q |
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|||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
17658197 |
actcgacagatcttccacacgataagcaatgtctcaatctcaacagttcgggaacaactttcaacaaatcaattcctatgcatcatagacattataagga |
17658098 |
T |
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| Q |
199 |
attaattttcaaaatacggttaacattgactaaaataagttaggaggac-nnnnnnnctggaccattctttctagccaaggcaataccagtgaa |
291 |
Q |
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||||| |||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||| | |||||| |
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| T |
17658097 |
attaactttcaaaatacggttaacgttgaccaaaataagttaggaggacaacaaaaactagaccattctttctagccaaggcaatgctagtgaa |
17658004 |
T |
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