View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6620_low_4 (Length: 258)

Name: NF6620_low_4
Description: NF6620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6620_low_4
NF6620_low_4
[»] chr3 (8 HSPs)
chr3 (1-155)||(43532995-43533149)
chr3 (29-151)||(43528739-43528863)
chr3 (155-231)||(43533211-43533288)
chr3 (82-151)||(43537478-43537549)
chr3 (155-190)||(43528929-43528964)
chr3 (92-151)||(43523046-43523107)
chr3 (1-30)||(43528676-43528705)
chr3 (1-30)||(43537362-43537391)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 43532995 - 43533149
Alignment:
Q  1 aatgggacgtgcaataaataagactgtaatctctatgcagaaaattggttagcattttctcttgttttgctactgtgatcactctgtctacttgtttcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43532995 aatgggacgtgcaataaataagactgtaatctctatgcagaaaattggttagcattttctcttgttttgctactgtgatcactctgtctacttgtttcag 43533094  T
Q  101 agaaggattgtttgttcatcagaacactcatgttggatcaactgatataaccgac 155  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43533095 agaaggattgtttgttcatcagaacactcatattggatcaactgatataaccgac 43533149  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 43528739 - 43528863
Alignment:
Q  29 atctctatgcagaaaattggttagcattttctcttgttttgctactgtgatcactctgtctacttgtttcagagaaggattgtt--tgttcatcagaaca 126  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||  | ||||||||||||    
T  43528739 atctctatgcagaaaattggttggcattttctcttgttttgctattgtgaccgctctgtctacttgtttcagagaaggattgttggtcttcatcagaaca 43528838  T
Q  127 ctcatgttggatcaactgatataac 151  Q
    |||| ||||||||||||||||||||    
T  43528839 ctcaagttggatcaactgatataac 43528863  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 43533211 - 43533288
Alignment:
Q  155 ctgtcaaat-aatttatgtatatgcatgagtgtgattgnnnnnnnnccgttgtgttttacttgctcagtttggagtac 231  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  43533211 ctgtcaaattaatttatgtatatgcatgagtgtgattgttttttttccgttgtgttttacttgctcagtttggagtac 43533288  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 43537478 - 43537549
Alignment:
Q  82 ctctgtctacttgtttcagagaaggattgtt--tgttcatcagaacactcatgttggatcaactgatataac 151  Q
    |||| ||||||||||||||||||||||||||  | | ||||||||||||||  |||||||||||||||||||    
T  43537478 ctctttctacttgtttcagagaaggattgttggtctgcatcagaacactcaaattggatcaactgatataac 43537549  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 43528929 - 43528964
Alignment:
Q  155 ctgtcaaataatttatgtatatgcatgagtgtgatt 190  Q
    |||||||||||||||||||||||||||||| |||||    
T  43528929 ctgtcaaataatttatgtatatgcatgagtatgatt 43528964  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 43523046 - 43523107
Alignment:
Q  92 ttgtttcagagaaggattgtttgtt--catcagaacactcatgttggatcaactgatataac 151  Q
    ||||||||||||||||||||| ||   ||||||||||||  | |||||||||||||||||||    
T  43523046 ttgtttcagagaaggattgttggtctgcatcagaacactattattggatcaactgatataac 43523107  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 43528676 - 43528705
Alignment:
Q  1 aatgggacgtgcaataaataagactgtaat 30  Q
    ||||||||||||||||||||||||||||||    
T  43528676 aatgggacgtgcaataaataagactgtaat 43528705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 43537362 - 43537391
Alignment:
Q  1 aatgggacgtgcaataaataagactgtaat 30  Q
    ||||||||||||||||||||||||||||||    
T  43537362 aatgggacgtgcaataaataagactgtaat 43537391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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