View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6621_high_4 (Length: 314)
Name: NF6621_high_4
Description: NF6621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6621_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 145 - 297
Target Start/End: Complemental strand, 46873932 - 46873780
Alignment:
| Q |
145 |
aaaaccgcctctcaccatttctcaatcgtcactacaaaactcgcttctcatctcaatctctctcctagcatggccgccgtcacacttctcgctctcggta |
244 |
Q |
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| T |
46873932 |
aaaaccgcctctcaccatttctcaatcgtcactacaaaactcgcttctcatctcaatctctctcctagcatggccgccgtcacacttctcgctctcggta |
46873833 |
T |
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| Q |
245 |
acggctctcccgacgtcttctcatctctcgctgctcttcgcgccggtcaatac |
297 |
Q |
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| T |
46873832 |
acggctctcccgacgtcttctcatctctcgctgctcttcgcgccggtcaatac |
46873780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 46874061 - 46874004
Alignment:
| Q |
16 |
atcaccccatcttgccccattcaatccaatggcggcatcctcaactaccactgcattt |
73 |
Q |
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| T |
46874061 |
atcaccccatcttgccccattcaatccaatggcggcatcctcaactaccactgcattt |
46874004 |
T |
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