View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6621_high_5 (Length: 268)
Name: NF6621_high_5
Description: NF6621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6621_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 3324429 - 3324673
Alignment:
| Q |
9 |
agcagagagtattatgagaaaattaaagatgatagatacaaacttcagaagnnnnnnnnn--taacaaaagaagtccgtatggatgcagaacaaatatgg |
106 |
Q |
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| T |
3324429 |
agcaaagagtattatgagaaaattaaagataatagatacaaacatcagaagaagaaaaaaaataacaaaagaagtccgtatggatgcagaacaaagatgg |
3324528 |
T |
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| Q |
107 |
aatgttgaaaaagaaaatgctataattatctgaaaaacatcatttcacttctattgaaaattttgctttaaagaaaaagaaatgcaaatggaaaattgac |
206 |
Q |
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| T |
3324529 |
tatgctgaaaaagaaagtgtta--attatcttaaaaacatcatttcacttctattgaaaattttgctttaaagaaaaagaaatgcaaatggaaaattgac |
3324626 |
T |
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| Q |
207 |
ccatgttctcataaagatcagaaaaggagagaagaatgcgaaggaac |
253 |
Q |
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| T |
3324627 |
ccatgttctcataaagatcagaaaaggagagaggaatgcgaaggaac |
3324673 |
T |
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