View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6621_low_1 (Length: 378)
Name: NF6621_low_1
Description: NF6621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6621_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 46355483 - 46355156
Alignment:
| Q |
1 |
ctatttatattatatggactatgagtaaagaaaaaattgctgtcacatgacatatctaacaatcaagacacaattttgtttttcacatacaaattttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46355483 |
ctatttatattatatggactatgagtaaagaaaaaattgctgtcacatgacatatctaacaatcaagacataattttgtttttcacatacaaattttgtt |
46355384 |
T |
|
| Q |
101 |
tttacatgacatataccaattatcaaaatcaacacactatttctctatcttgtagtttagttttagctgatactacgcaaaaagattcatatccaattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46355383 |
tttacatgacatataccaattatcaaaatcaacacactatttctctatcttgtagtttagttttagctgatactacgcaaaaagattcatatccaattat |
46355284 |
T |
|
| Q |
201 |
ccattgtctacactcaatgataatgttaaaagggaatgcatgaattttttatagttggannnnnnnnnattatttctgttatatccttaaataaatttgc |
300 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
46355283 |
ccattgtctacactaaaggataatgttaaaagggaatgcatgaattttttatagttggatttttttttattatttatgttatatccttaaataaatttgc |
46355184 |
T |
|
| Q |
301 |
ttttcaaatcattatactactaatatta |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
46355183 |
ttttcaaatcattatactactaatatta |
46355156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 46355126 - 46355081
Alignment:
| Q |
326 |
ttaaaatctataactattaataaaggaaaaacaaacatattcttgg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46355126 |
ttaaaatctataactattaataaaggaaaaacaaacatatttttgg |
46355081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University