View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6621_low_3 (Length: 329)
Name: NF6621_low_3
Description: NF6621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6621_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 174 - 311
Target Start/End: Original strand, 17859508 - 17859645
Alignment:
| Q |
174 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
273 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17859508 |
cactaacactagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
17859607 |
T |
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| Q |
274 |
cattagctgatggtccatcaaattctatatacaaatac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
17859608 |
cattagctgatggtccatcaaattctatatacaaatac |
17859645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 17859350 - 17859411
Alignment:
| Q |
16 |
atgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
77 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17859350 |
atgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
17859411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 174 - 311
Target Start/End: Complemental strand, 34916304 - 34916167
Alignment:
| Q |
174 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
273 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34916304 |
cactaacattagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
34916205 |
T |
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| Q |
274 |
cattagctgatggtccatcaaattctatatacaaatac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
34916204 |
cattagctgatggtccatcaaattctatatacaaatac |
34916167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 34916462 - 34916401
Alignment:
| Q |
16 |
atgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34916462 |
atgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
34916401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 174 - 311
Target Start/End: Original strand, 4968039 - 4968176
Alignment:
| Q |
174 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4968039 |
cactaacactagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaaaaccacaagatgttgatc |
4968138 |
T |
|
| Q |
274 |
cattagctgatggtccatcaaattctatatacaaatac |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4968139 |
cattagctgatggtccatcaaattctatatacaaatac |
4968176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 4967881 - 4967942
Alignment:
| Q |
16 |
atgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4967881 |
atgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
4967942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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